Streptomyces lunaelactis: SLUN_29065
Help
Entry
SLUN_29065 CDS
T06347
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
slk
Streptomyces lunaelactis
Pathway
slk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUN_29065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slk03019
]
SLUN_29065
Messenger RNA biogenesis [BR:
slk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLUN_29065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AVZ75657
UniProt:
A0A2R4T977
LinkDB
All DBs
Position
6295110..6296795
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELGAPPKLPKGGLRITPLGGLGEIGRNMTVFEYEGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDVEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVTEGHRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDILLSDSTNAEVPGFVPPEKDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVVVDLVDGKARIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIDDSVFSAVVPKIEEAINKSAQDGVMEPHQLQQLVRRSV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaacttggcgccccgccgaagctgcccaagggcggcctgcgc
atcaccccgctcggcggtctcggcgagatcggccgcaatatgacggtcttcgagtacgag
ggccggctgctgatcgtcgactgcggtgtgctcttccctgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgaccattcgggaccgcctcgacgacgtcgagggcatt
gtgctcacgcacggccacgaggaccacatcggcggcgtcccctatctgctccggctcaag
ccggacatcccgctcatcggctccaagctgaccctcgccctgatcgaggcaaagcttcag
gagcaccgcatccgcccgtacaccctcgaggtgacggagggacatcgcgagcgcatcggc
ccgttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctggccgtcgcc
atccgcacccctgcgggcatggccgtccacactggcgacttcaagatggaccagctcccg
ctggacggccggctcaccgacctgcatgccttcgcgcggctcagcgaggagggcatcgac
attctcctctccgactcgacgaacgccgaggtcccgggcttcgttccgccggagaaggac
atctccaatgtcctgcgcacggtcttcgcgaacgcccagaagcgcatcatcgtggcgagc
ttcgcaagtcacgtgcaccgcatccagcagatcctggacgccgcccacgagtacggccgc
agggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctcggc
tatctgaaggttccggccggcctggtcgtcgacgtcaagacgctcgatgacctccctgac
cacgagatcgtgctcgtctgcaccggctcgcagggcgagccgatggcggcgctctcccgg
atggccaaccgggaccaccagatccggatcgtccagggcgacacggtcatcctggcctcg
tccctcatcccgggtaacgagaacgcggtctaccgcgtgatcaacggcctgaccaggtgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccatgtctcgggccacgcctcggcc
ggcgagctcctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctccgcgccaacgccgaactcggtgccctgacgggcgtcccgaaggac
cgcatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacggcaaggccaggatc
gtcggcaaggtccaggccggctatgtgtacgtcgacggcctctcggtcggcgatgtcacc
gagacctccctcaaggaccgccgcatcctcggcgacgagggcatcatctcggtcttcatc
gtggtcgacagctccagcggcaagatcgtcggcggcccgcacatccaggccaggggctcc
ggtatcgacgactcggtgttcagcgccgtcgttcccaagatcgaagaggccatcaacaag
tccgcccaggacggcgtcatggaaccccaccagctgcagcaactcgtccgccgttcggtg
ggcaagtgggtctccgacacctaccgtcggcgcccgatgatcctccccgtcgtcgtcgag
gtctga
DBGET
integrated database retrieval system
