Staphylococcus lloydii: ISP08_04225
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Entry
ISP08_04225 CDS
T07245
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sllo
Staphylococcus lloydii
Pathway
sllo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sllo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISP08_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sllo03019
]
ISP08_04225
03009 Ribosome biogenesis [BR:
sllo03009
]
ISP08_04225
Enzymes [BR:
sllo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ISP08_04225
Messenger RNA biogenesis [BR:
sllo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ISP08_04225
Ribosome biogenesis [BR:
sllo03009
]
Prokaryotic type
rRNA helicases
ISP08_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Flavi_DEAD
AAA_30
AAA_19
INTS5_N
Motif
Other DBs
NCBI-ProteinID:
QPM75949
UniProt:
A0A7T1B1F2
LinkDB
All DBs
Position
892101..893606
Genome browser
AA seq
501 aa
AA seq
DB search
MQNFKELGISAKTVETLESMGFTEATPIQKDSIPLALAGRDVLGQAQTGTGKTGAFGIPL
IEKVVGKEGVQSLILAPTRELAMQVAEQLKEFSKDQKVQVVTIFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTTGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQNLVQQFMNSPEIVKTMDNKMSNPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEQANS
RQMNALRPPHRKEVLKARENDIKEKVQNWMSKENEPRLQRIAGQLLEEYNDVELIASLLQ
ELVEANDEVEVQLTFEKPLARKGRPSKGPRRNNNNKRGNKFDNKGRRGKPAFNKKGKKDK
PSDRKDNKKSMKGRTFADHQK
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatatcggctaaaacagtagaaaccctagaatcaatg
gggtttacagaagccacaccaattcaaaaggatagtattccacttgctttagcaggtaga
gacgtattaggacaagctcaaacaggtactggtaaaacaggtgcttttggtattccttta
atagaaaaagtagtaggtaaagaaggcgttcaatcattaattttagcccctacaagagaa
ttagcgatgcaagttgctgaacaattaaaagaatttagtaaagatcaaaaagtacaagtc
gttactattttcggcggtatgccaattgatcgtcaaattaaggcattgaaaaaaggacct
caaatcgtagttggtacaccaggacgtgttatagaccatttaaaccgtcgtactttaaaa
actacaggaatccatactttaatcttagatgaagcggatgaaatgatgaacatgggcttt
attgatgatatgagatttatcatggataaaatcccagcagaacaacgtcaaacgatgtta
ttctctgctactatgcctaaagctattcaaaatctagttcaacaatttatgaactcacct
gagattgtaaaaacaatggataacaaaatgtctaatccacaaattgacgaatattataca
atcgttaaagaattagaaaaatttgatacttttactaacttcttagatgtacatcaacca
gagttagctatcgtattcggtagaacaaaacgtcgtgttgatgaattaactagtgcgtta
ttatctaaaggttacaaagctgagggattacatggtgatatcactcaagctaaacgttta
gaagtcttgaaaaaattcaaaaacgatcaaatcgatatactagtagctacagacgttgct
gcgcgtggactagatatttctggcgtaagtcatgtttataactttgatattcctcaagat
actgaaagctatacgcacagaattggacgtacaggtcgtgcaggtaaagaaggtattgct
gttacattcgttaacccaattgaaatggattatatccgtcaaattgaacaagcgaatagt
cgtcaaatgaatgctttacgtccaccacatcgtaaagaagtattaaaagcacgtgaaaac
gacattaaagaaaaagtacaaaattggatgtctaaagaaaatgaacctagattacaacgc
atcgcgggtcaacttttagaagaatacaatgatgttgaattaattgcttcattactacaa
gagttagtagaagcaaacgatgaagttgaagtacaacttacatttgaaaaacctttagca
agaaaaggtcgtccttctaaaggaccacgtcgtaataacaacaataaacgcggtaacaag
tttgataataaaggtcgccgtggcaaaccagcatttaacaaaaaaggtaaaaaagataaa
ccatcagatagaaaagacaacaaaaagtcgatgaaaggtcgtactttcgctgaccaccaa
aaataa
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