Staphylococcus lloydii: ISP08_11420
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Entry
ISP08_11420 CDS
T07245
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sllo
Staphylococcus lloydii
Pathway
sllo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sllo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ISP08_11420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sllo03400
]
ISP08_11420 (mfd)
Enzymes [BR:
sllo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ISP08_11420 (mfd)
DNA repair and recombination proteins [BR:
sllo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ISP08_11420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Glyco_hydro_115
DUF1421
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QPM74922
UniProt:
A0A7T1AZH1
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All DBs
Position
complement(2311748..2315260)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKSIITDYINKDKRYQELNEVFGKDNILVTGLSAAAKATIIAEKYLESKQQLLVVTNNLY
QADKLEADILQFVDANDVYKYPMQDIMTEEFSTQSPQFMSERIRTLTALSQNERGLFIVP
LNGLKKWLTPVELWQSHQITLSVGEDIDVDDLLTKLVNMGYRRESVVSHIGEFSLRGGII
DIYPLIGEPVRIELFDTEIDSIRNFDVESQRSNDNMQEISITTASDYIITDDVIKHTKEK
LTEAYQETRPKIDKSVRNDIKETYDSFKLFETSLFDHQVMRRLVAFMYEQPATIIDYFQN
DAIVAVDEYNRIKETEETLTTEVDDFMQNLIESGKGFIGQSFLDYQNFETLLKKHPVAYF
TLFTATMSVKLQEIIKFSCKPVQQFYGQYDIMRSEFQRYIANDYTIVVLAETETKKERIQ
SMLNEMHIPTFVDVAENEIQGGRAIITEGSLSEGFELPYMQLVVVTERELFKSQQKKKRK
QQKTMTNAEKIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVAGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKMPKLNKLGGTEWKKTKAKVQQSVEDIADELIELYKEREMSVG
YQYGPDSAEQNDFELDFPYELTPDQAKSITEIKGDMEQQKPMDRLLCGDVGYGKTEVAVR
AAFKAVLEGKQVAFLVPTTILAQQHYETLIERMQDFPIDIELISRFRTTKEIKEVKEGLK
SGKVDIVVGTHKLLGKDIVYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNKVQ
SIYEKREQLQMLMPDASIGVAHGQMTERDLEETMIGFINHEYDILVTTTIIETGVDVPNA
NTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIAPEQNDAPEVE
IELNIDAYLPAEYIQNEQAKIEIYKKLRKIENETQLMDIKDELIDRFNEYPAEVERLLDM
MEVKIHALHAGVTLIKDKGKTVEIFLSEKGTEDIDGEALFKQTQPLGRAMKVGVQDGKMK
VTLTKSKQWFENLKFLAKCLEESMVIKDEV
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcaataattacagattatataaataaagataaacgttatcaagaattaaacgaa
gtatttgggaaagacaatattttagttacaggcttgtctgctgcggcaaaagcaacgatt
attgcagagaaatatttagaaagtaagcaacaattactcgttgttacgaataatttatat
caagcagataaactagaagcggatatattacaatttgtagatgcgaatgatgtttataaa
tatccgatgcaagatattatgacggaagaattttctacgcaaagccctcaatttatgagt
gaacgtatacgtacattaacggcactatctcaaaatgagagaggcttatttatcgtgccg
ttaaatggcttgaaaaaatggttaacgcctgtcgaattatggcaatctcatcaaattact
ttgtctgtaggtgaagacatagatgtagatgacttactaactaaattagtcaatatgggc
tatagacgcgaaagcgttgtgtcgcatatcggtgaattttcattacgtggtggcattatt
gatatttatccattaataggcgaaccagtaagaattgaattgtttgatactgaaatcgat
tctattagaaattttgatgtggaatcacaaagatctaacgataatatgcaagaaattagt
attacgacagctagtgattatattattacagacgatgttattaaacatacaaaggaaaaa
cttactgaagcatatcaagaaacgcgtccgaaaattgataaatccgtacgtaatgatatt
aaagaaacatacgatagctttaaactatttgaaacatcattatttgaccatcaagtaatg
agaagattagttgcgtttatgtatgaacaacctgcaacaataatagattacttccaaaac
gatgccatcgtagcagtagatgaatataatagaattaaagaaactgaagaaactttaacg
actgaagtcgatgactttatgcaaaacttaatcgaaagcggtaagggatttatcggtcaa
agtttcctagattatcaaaattttgaaacattgctaaaaaaacatccagttgcatatttc
acattatttacggcaacaatgtcagtgaaactgcaagaaatcattaaattctcttgtaaa
ccagtgcaacaattttacggacaatacgatattatgcgttcagaatttcaacgttatatt
gctaatgactatacgatagtcgttttagctgaaacggaaacaaaaaaagaacgtattcaa
tctatgttgaatgaaatgcatattccaacgttcgtggatgttgcagaaaacgaaattcag
ggcggacgtgccattattacagaaggaagtttgtctgaaggtttcgaactaccatatatg
caacttgtcgttgttacagaacgagaattatttaaatcacaacaaaagaaaaagcgcaaa
caacaaaaaacaatgacgaatgccgaaaaaataaaatcctatcaagacttaaaagttgga
gattatgtcgtacacgtgcatcacggtgtcggtagatatttaggagtcgaaacattagaa
gttgcgggcgtacacaaagattatattaagttgcaatataaagggactgaccagctattt
gtacccgtagatcaaatggatcaagtccaaaaatatgtcgcgtccgaagacaagatgcca
aagcttaataaattaggtggcactgaatggaagaagacaaaggctaaagtacaacaaagc
gttgaggacattgctgacgaattaatagaattatacaaagagcgtgaaatgtctgtagga
tatcaatatggacctgatagtgcagaacaaaacgacttcgaattagatttcccatacgaa
ttaacacccgatcaagcgaaatcgattactgaaattaaaggtgatatggaacaacaaaaa
ccgatggatagattgctttgtggtgatgtgggttacggtaaaacggaggtcgctgtccgc
gcagcatttaaggcagtattagaaggaaagcaagtggcattcttagtaccgacgacgatt
ctagcgcaacaacactacgaaacgttaattgaacgtatgcaagatttccctattgatatt
gaattaattagccgctttagaacgactaaagaaattaaagaagtaaaagaaggcttaaag
tcaggtaaagttgatatcgtagtgggtactcataaattacttggtaaagatatagtttat
aaagatttagggttattaatcgtcgatgaagaacagcgctttggtgttagacataaagaa
cgtattaaatcgttaaaaactaatgtcgacgtactgacattaactgcgacaccaattcca
agaacattgcatatgagtatgctaggcgtgcgtgatttatcggttattgaaacgccgcca
gaaaataggttccctgtacaaacttatgtcttagaacaaaattctaatttcataaaagaa
gcattagagcgtgaattatctagagatggacaagtattttacttatataataaagtacag
tctatttatgaaaaacgtgagcaattacaaatgttaatgccggatgcttctataggtgtt
gcacatgggcaaatgaccgaacgagatttagaggaaacaatgattggttttattaaccat
gaatatgacattcttgtaacgacaaccattatcgaaacaggtgtagatgtacccaatgct
aacacgcttataattgaagaagcggatcgctttgggcttagtcagttataccaattaaga
ggtagagttggacgttctagtcgtattggttatgcttatttccttcatccagctaataaa
gtacttactgaaacggcagaagatagattacaagcgataaaagaatttaccgaactaggt
tctggtttcaaaatagcaatgcgtgacttgaatatacgtggtgcaggtaatctactaggt
aaacagcaacacggatttattgactcagtcggtttcgatttatattctcaaatgttagaa
gaagcggttaatgaaaaacgaggcatcgcccctgaacaaaatgatgcgccagaagtggaa
atagaattgaatattgatgcttatttaccagcagaatacattcaaaacgaacaagctaaa
atagaaatttataaaaaacttagaaaaatcgaaaatgaaacacaactgatggatattaag
gatgaacttatcgatcgtttcaatgaatacccagctgaagtggaacgtctgttagatatg
atggaagtcaaaatacatgctttacatgcaggtgtgacgttaattaaagataaaggtaaa
acagtagaaattttcctatctgaaaaaggtactgaagacatcgatggggaagcattgttt
aaacaaacccaaccattagggcgtgcaatgaaagttggcgttcaagatggtaaaatgaaa
gtaacattaaccaaatcaaaacaatggtttgaaaatcttaagtttttagcgaaatgcttg
gaagaaagtatggtaattaaggatgaagtctaa
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