Stenotrophomonas sp. LM091: BIZ42_03010
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Entry
BIZ42_03010 CDS
T04630
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIZ42_03010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_03010
03009 Ribosome biogenesis [BR:
slm03009
]
BIZ42_03010
Enzymes [BR:
slm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BIZ42_03010
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BIZ42_03010
Ribosome biogenesis [BR:
slm03009
]
Prokaryotic type
rRNA processing factors
BIZ42_03010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AOX61255
LinkDB
All DBs
Position
672087..675545
Genome browser
AA seq
1152 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALTKPASFLIYQESRLIVRALRDYLRADVGEILVDTEELYETAQ
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPVAPVVTQVKHSQPAPVREA
PEPVAAPAPVAAPVAAPAATGVVGWLKRIFGGEPAPAAAPQPSSRPGQDGNRNGRNKDRN
GKDRNGRRDERGERGGNGNAQAQGRGKDRGERGERGPKGERRDERRQDTAAPANGNAAQV
QAPSQGKPRNEQQPAKPRNEARNDQQQPKLKQKQGQNGQAKPQQNDGDKPAVSEKPARQP
QADAPKPTTAAPVAADAAVIAAAAVVATDAAASAAHAQDATKAVVAEDAQAAVSEATEQG
DAPANAEDGTGEGASRRRRGRRGGRRRRRGNGEQAAGSDGLNGDENGLDDEGDDQDGDQD
GDTAAPAERQVANHGQPQPEFEFDDESGNAPAAAPAQVQAPRPAPAAAVAAAAPAAVVSS
PVVTAGHTEPTPAPVAAPVAEKAPTPVVEKATAPAAEPVAEKAPASYNDPVPFVESPKPT
PAAAQPAAPVEAPRVVEPVAAPVAPAPVAAPAAPVPAAPAPVAAPAAPVPAAPAPVAAPV
APAPVVAPAAPAPVAAPAAPAPVAAPSAPVVETAPEEVKEPTAAPVQTSMLDAVDATQAP
AQPAAPPARTESAPAGPVVHNGQLFGATASETPATTNAAEQAAQAEAREDIPTDAPQADE
GDKADQEKKDTL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaatgccacgcaggctgaagagctgcgggtagccatcgtggat
ggccagacgctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtcgaac
atctacaaaggccgcatcacgcgccttgagccttcactggaagcggccttcgtcgagtac
ggcggtgagcgccatggcttcctgccgctgaaggaaatctcccgcgattacttccaggct
ggcgtcgaccacaacaaggccggcatccgcgagctgctgcgtgaaggccaggaagtcgtg
gtccaggtggacaaggaagagcgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggctggccgctacatggtcctgatgccgaactcgccgagcgccggtggcgtctcgcgt
cgcatcgagggcgaagaccgtgccgcgctgaaagacgcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagaactgcag
tgggatctggattacctgctgcaggtctggaagtcgatcgccgaagcggcactgaccaag
ccggcatcgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgctgatgtcggcgagatcctggtggacaccgaggagctgtacgagaccgcccag
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcgtatgagcgcaat
gtccgcctgccgtccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccatc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgccttccagacc
aacctggaagcggctgaagaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgatttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagctgggccgcatttcgcgcttc
ggcctgatggaaatgagccgccagcgcctgcgcccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcc
atcatccgcgtggctgaagagcatgcgatgaaggagaacaccgggcaggtgctggtccag
gccccggtcgagatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgagatc
gagcagcgccatgacgcgccgatcgtgatcgtggccgatgagcagctgcacaccccgcat
tacgaagtgacccgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcactgaccaaggcccagctgaacatc
ccggtcgccccggtggtgacccaggtcaagcacagccagccggccccggtgcgtgaagcc
ccggaaccggtggccgcaccggccccggtcgccgcccccgtggccgccccggccgccacc
ggcgtggtgggttggctcaagcgcatcttcggtggcgaaccggccccggccgccgcaccg
cagccgagcagccgcccgggccaggacggcaaccgcaacggtcgcaacaaggaccgcaac
ggcaaggaccgcaacggccgccgcgatgagcgtggtgagcgcggcggtaacggcaatgcg
caggcgcagggccgtggcaaagaccgtggtgagcgtggcgagcgcggcccgaagggcgag
cgtcgtgacgagcgccgccaggacaccgccgcaccggccaatggcaacgcagcacaggtg
caggcgcccagccagggcaagccgcgcaacgagcagcagccggccaagccgcgcaatgaa
gcgcgcaatgaccagcagcagccgaagctgaagcagaagcagggccagaacggccaggcc
aagccccagcagaatgacggcgacaagccggccgtgagcgaaaagcccgcgcgccagccg
caggccgatgcacccaagccgaccaccgctgccccggtcgccgccgatgccgcggtgatc
gccgccgctgccgtggtcgccaccgatgctgctgcatcggctgcccacgcgcaggacgcg
accaaggccgttgtggccgaggacgcgcaggctgcagtgagcgaggccaccgaacagggt
gacgccccggccaacgccgaagacggtaccggcgaaggcgcttcgcgtcgtcgtcgcggt
cgtcgcggtggccgtcgtcgtcgtcgtggcaacggtgagcaggccgccggcagcgatggc
ctcaatggtgacgagaacggtctggatgacgagggcgacgatcaggatggcgatcaggac
ggcgacaccgccgccccggccgagcgccaggtcgccaaccatggtcagccgcagccggag
ttcgagttcgacgacgaatccggcaacgcgccggccgctgcccctgcccaggtccaggcc
ccgcgcccggcgccggcagccgctgtcgccgctgccgctccggcggcggtggtcagcagc
ccggtcgtgacggcgggccacaccgagccgaccccggcgccggtggcagcaccggtcgcc
gaaaaggcaccgaccccggtcgttgaaaaggccactgccccggcagccgaaccggtcgcc
gagaaggccccggcctcctacaacgacccggtgccgttcgtggaaagcccgaagccgacc
ccggccgctgcgcagccggctgcaccggtggaagcaccgcgtgtggttgaaccggtggct
gctccggtggctccggctccggtggctgctccggcggctccggttccggcggctccggct
ccggtggctgctccggcggctccggttccggcagctccggccccggtcgctgctccggtg
gctccggccccggtggttgctccggcggctccggctccggtggctgctccggcagctccg
gctccggtcgctgctccgtcggccccggtcgtcgagaccgccccggaagaagtgaaggag
ccgaccgccgcaccggtgcagaccagcatgctggatgccgtcgatgcgacccaggccccg
gcacagccggcagcgccgccggcacgcaccgaatcggccccggccggcccggtcgtgcat
aacggccagctgttcggtgcgaccgccagcgaaaccccggccaccaccaatgccgccgaa
caggccgcccaggccgaggcccgcgaggacatccccaccgatgccccgcaggccgacgaa
ggcgacaaggccgaccaggaaaagaaagacacgctctga
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