Stenotrophomonas sp. LM091: BIZ42_03455
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Entry
BIZ42_03455 CDS
T04630
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slm
Stenotrophomonas sp. LM091
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slm03016
]
BIZ42_03455
Enzymes [BR:
slm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BIZ42_03455
Transfer RNA biogenesis [BR:
slm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BIZ42_03455
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AOX64181
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All DBs
Position
779125..780204
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AA seq
359 aa
AA seq
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MAYWIKTPAELDERFRQRPTRIGLDTEFIRERTYWPQLALVQMAVGDEILLIDPLIPGMN
EALAPWLTDTSILKIMHSASEDLVTFKVACGVLPRPLFDTQIGAALAGIGGGMGYQKLVT
AVTGVTLAKGETRSDWMRRPLSEAQLEYAADDVEYLFQIHDTIDARLEELGRRQWLQDDA
ERLLASVEHDEERWPHVAMRSAQFMDTPAQLRLLRLLRWRDVQARASDKPRSWVLDNELA
AVLARTPPADVDALSKLMEGFPKAPRKLAAQVWQALITPLADEAEAPLALPATDANKQAL
KRLQDAVSARSAELGLPDGVLASRKHLESYIERRQWPTALAGWRQAQLEPILAPLLPPA
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
gtggcttactggatcaaaaccccggcggaactggacgagcgcttccgccagcgccccacc
cgcatcggcctggacacggagttcatccgcgagcgcacctactggccgcaactggccctg
gtacagatggcggtcggcgatgaaatcctgctgatcgacccgctgatccccggcatgaac
gaggccctggccccgtggctgacggatacctcgatcctcaagatcatgcacagcgccagc
gaagacctggtcaccttcaaggtcgcctgcggcgtgctgccacgcccgctcttcgacacc
cagatcggcgctgcgctggccggcatcggcggcggcatggggtaccagaagctggtcacc
gcggtcaccggcgtcaccctggccaagggcgagacccgttcggactggatgcgccgcccg
ctctcggaggcacagctggagtacgccgccgacgacgtggagtacctgttccagatccac
gacaccatcgacgcacgcctggaagaactcggccgccgccagtggctgcaggacgatgcc
gagcgcctgctcgccagtgtggaacacgatgaagagcgctggccgcatgtggcgatgcgc
tcggcgcagttcatggataccccggcacagctgcgcctgctgcgcctgctgcgctggcgc
gacgtgcaggcccgtgccagcgacaagccgcgcagctgggtgctcgacaacgaactggct
gccgtgctggcacgcacgccgccggccgatgtggatgcgctgtccaaactgatggaaggc
ttccccaaggccccgcgcaaactcgccgcgcaggtctggcaggcgctgatcaccccgctt
gccgatgaagccgaagccccgctggcgctgccggccaccgatgccaacaagcaggccctc
aagcggctgcaggatgcggtcagcgcgcgcagcgccgaactcggcctgcccgacggcgta
ctggcctcgcgcaagcacctggaaagctacattgaacgccgccaatggcccacggcgctg
gccggctggcgccaggcgcagctggagccgatcctggcccccctgctgccacctgcctga
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