Stenotrophomonas sp. LM091: BIZ42_03695
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Entry
BIZ42_03695 CDS
T04630
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIZ42_03695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_03695
03016 Transfer RNA biogenesis [BR:
slm03016
]
BIZ42_03695
Enzymes [BR:
slm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BIZ42_03695
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BIZ42_03695
Transfer RNA biogenesis [BR:
slm03016
]
Prokaryotic type
tRNA degradation factors
BIZ42_03695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF7680
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_2nd
AATF-Che1
Motif
Other DBs
NCBI-ProteinID:
AOX61372
LinkDB
All DBs
Position
complement(822907..825018)
Genome browser
AA seq
703 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTC
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PDIDGDIAALIGASAALSLAGTPFKGPIAAAKVGYKNGEYILNPTVTELKDSELELVVAG
TANAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTA
LISALQEAIGPRLGEAFQVRDKLQRRDAISAIKKDVTESLAGRVAADGWNPAELSKEFGE
LEYSTMRNSVLDTKVRIDGRALDTVRPISVKTGILPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLE
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKSPVAGIAMGLVKEGDRFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGAAAAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgaaaccggc
gaaatcgcccgtcaggccggcggtgccgtcatcgtcaagttcgacgacaccgtgctgctg
gtctccgccgttgccgccaagagcgcgcgtgagggccaggacttcttccccctgacctgc
gactatcaggagaagttctacgccggtggccgtatcccgggcggtttcttcaagcgcgaa
ggccgcgcgaccgaaaaagagacgctgatttcgcgcctgatcgatcgcccgatccgtccg
ctgttcccggaagactacaagaacgaagttcagatcatcgccacggtgatgtcgctgaac
ccggacatcgatggtgacatcgctgccctgatcggcgcctcggccgcgctgtcgctggcc
ggcaccccgttcaagggtccgatcgccgccgccaaggtgggttacaagaacggtgagtac
atcctcaacccgaccgtgaccgaactgaaggattcggagctggaactggttgtcgccggt
accgccaacgccgtgctgatggtggaatccgaagccgcgctgctgtccgaagacgtgatg
ctgggcgccgtgaccttcggtcatcgcgaaatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtggaagccggcaccaagccgtcgacctgggaagccccggccaagaacaccgcg
ctgatcagcgccctgcaggaagccatcggcccgcgcctgggcgaagccttccaggtgcgc
gacaagctgcagcgccgtgacgccatctcggcgatcaagaaggacgtgaccgagtcgctg
gcaggccgtgtggccgctgatggctggaacccggccgagctgtcgaaggaattcggcgag
ctggaatacagcaccatgcgcaactcggtgctcgacaccaaggtccgcatcgacggccgt
gcgctggacaccgtccgcccgatctcggtgaagaccggcatcctgccgcgtacccacggt
tcctcgctgttcacccgcggtgaaacgcaggccatcgtgaccatcaccctgggcaccgcc
cgtgatggccaggtcatcgatgccgttgccggtgagtacaaggaaaacttcctcttccat
tacaacttccccccctactcggtgggtgagaccggccgcatgatgggcccgaagcgtcgc
gaaatcggccacggccgcctcgccaagcgcggcgtgctggcagtgatgccgtcgctggaa
gccttcccgtacaccatccgcgtggtgtcggaaatcaccgaatccaacggctcctcgtcg
atggcctcggtctgcggttcctcgctggccctgatggacgccggcgtgccggtcaagtcg
ccggtggccggtatcgccatgggtctggtcaaggaaggcgatcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtactgct
gagggcatctccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcactgcagcaggccaaggctggccgtctgcacatcctgggtgaaatggcccac
ggcctgaccgccccgcgcgaagagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggttccaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggatgacggcaccatcgtcatcgcctcg
gtcaacgccatcgctgcgcaggctgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
acgatcctgccgggcaaggacggtctggtccacgtgtcgcagatctccagcgaccgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtcgaagaaggcgaaggcgccgct
gccgccgagtga
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