Stenotrophomonas sp. LM091: BIZ42_05440
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Entry
BIZ42_05440 CDS
T04630
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BIZ42_05440
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
slm02022
]
BIZ42_05440
02035 Bacterial motility proteins [BR:
slm02035
]
BIZ42_05440
Two-component system [BR:
slm02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
BIZ42_05440
Bacterial motility proteins [BR:
slm02035
]
Pilus system
Twitching motility proteins
BIZ42_05440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
Mg_chelatase
HTH_50
HTH_30
Pre_tape_measure
Motif
Other DBs
NCBI-ProteinID:
AOX61688
LinkDB
All DBs
Position
1237911..1239296
Genome browser
AA seq
461 aa
AA seq
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MNDTRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPD
GNGIELVTEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHAL
ELNNTERPAPAPLAPEQAARLLGDSPSMDVLRATIGKVARSQAPVYILGESGVGKELVAR
TIHAQSARAPGAFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYY
RINVIELRVPPLRERRSDLPALAASILARLARTHGRPTPLLAPSALDALAQYHFPGNVRE
LENILERALALAEEDRIGASDLRLPQHAPRFGAGSAPATQEEAVVDLPAGNGALPSYIEQ
MERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacacccgcagcgccctcgtcgtcgatgacgagcgtgacatccgcgaactgctg
gtactgaccctgggccgcatgggcctgcgcatcagcaccgcggccaacctcgccgaagcc
cgtgaactgctggccagcaacccgtacgacctgtgcatcaccgacatgcgcctgcccgac
ggcaacggcatcgagctggtcaccgagatcgcgcagcactacccgcgcacgccggtggcg
atgatcaccgccttcggcagcatggacctggcggtggaagccctgaaggccggcgccttc
gatttcgtcagcaagccggtcgacatctcggtgctgcgcggcctggtcaagcacgcgctg
gaactcaacaacaccgagcgccccgcccccgcaccgctcgcgccggaacaggccgcacgc
ctgctcggcgactcaccttcgatggatgtgctgcgcgccaccatcggcaaggtcgcgcgc
agccaggcgccggtctacatccttggcgaatccggcgtcggcaaggaactggtcgcacgc
acgatccacgcgcagagcgcccgcgcgcccggcgccttcgtgccggtcaactgcggcgcc
attccgtcggaactgatggaaagtgagttcttcggccacaagaagggcagcttcagcggc
gcgcatgccgacaaacctggcttgttccaggcggcgcatggcggcaccctgttcctggat
gaagtggccgaactgccgctgcagatgcaggtcaagctgctgcgcgcgatccaggagaaa
tcgatccgtccggtcggcgccgccaccgaggtgccggtggacgtgcgcatcctctcggcc
acgcacaaggacctgggcgaactggtcgaagatgggcggttccgccacgacctgtactac
cgcatcaacgtgatcgaactgcgcgtgccgccactgcgcgaacgccgcagcgacctgccc
gcgctggccgcctcgatcctggcccggctggcccggacccacggccgcccgaccccgctg
ctggcgccctcggcgctggacgccctggcccagtaccacttccccggcaacgtgcgcgaa
ctggagaacatcctcgagcgtgccctggcgcttgccgaggaagaccgcatcggtgccagc
gacctgcgcctgccccagcacgcgccgcgcttcggggccggcagcgcgcccgccacccag
gaagaagccgtggtcgacctgccggccggcaatggcgccctgccctcctacatcgagcag
atggagcgcaccgcgatccagaaggcgctggaagaaaaccgctggaacaagacccgcacc
gcggcccagctgggcatcaccttccgcgcgctgcgctacaagctgaaaaagctcggcatg
gagtag
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