Stenotrophomonas sp. LM091: BIZ42_08690
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Entry
BIZ42_08690 CDS
T04630
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slm
Stenotrophomonas sp. LM091
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_08690
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BIZ42_08690
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BIZ42_08690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
SepZ
Motif
Other DBs
NCBI-ProteinID:
AOX62278
LinkDB
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Position
1989576..1992080
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AA seq
834 aa
AA seq
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MTPPMFPISTLLPQLLTTLERGPRLVLEAPPGAGKTTQVPLALLDAPWLEGRRIIMLEPR
RVAARSAAQFMARQLGENVGETVGYRIRFENRISARTRIEVVTEGILTRMLQDDPLLEGV
GALLFDEFHERHLAGDLGLALALDVQSQLREDLRIVVMSATLDGERLAQFLDAPRLSSEG
RSFPVTIAHFPARRDEALEPQARRAVEQALAEHPGDVLVFLPGQREIARVQTALQSVLDP
AVQVLPLHGELPVDQQSQVLQPDPGGRRRVVLATNVAESSVTLPGVRVVIDAGLAREPRY
DPNSGFARLDVVNIAQASADQRAGRAGRVAEGWAWRLWPQSQRLEAQRRPEIAQVELASL
ALELAAWGSDDLRFVDTPPAGALAAARELLQRLGALSDSGTLTPLGRRMLTLGTHPRLAA
MLMAAGAGVEQALACDLAALVEARDPLRQGGDALAARWRALAAFRQGRVPPDANRGGLVT
IDAASKQWRRRLRCEVAPPASVEAHQLGDLLAHAFPDRIAARHPTDPLRYLLANGRSARL
FDPSDLRGEPWLVAVELRYEARDALLLRAAPVDENRLRRDFPDRFKQEDVVRWDGEKRAL
VARRETRFDRIVLDSRSAGRVDPAQAAQALTEAVAELGLDALPWTEGLRQWQARVLAVRA
WMPELELPDVSDAALLATLPTWLTPAFNGRTRLDALDESTLGEALKSPLPWAQRQLIDRH
APVRITVPSGMERPIHYALDADGVTPQAPVLAVKLQELFGLSDTPRIADGRIPLTLHLLS
PGGRPLQVTQDLRNFWANTYAEVKKEMKGRYPKHPWPDDPWTATATHRAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccccgatgttcccgatttccacgctgctgccgcagctcctgaccacgctggag
cgcggcccccggctagtgctggaagcgccgcccggcgccggcaagaccacccaggtgccg
ctggccctgctggatgccccgtggctggaaggccgcaggatcatcatgctcgagccacgc
cgcgtggccgcccgcagcgcggcgcagttcatggcgcgacagctgggcgagaacgtcggt
gagaccgtcggctatcgcatccgattcgagaacaggatctccgcgcggacccggattgaa
gtggtgaccgaaggcatcctgacccggatgctgcaggacgatccgttgctggagggcgtg
ggcgcactgctgttcgatgaattccatgagcgccaccttgccggcgatctgggcctggcg
ctggcgctggatgtgcagtcgcagctgcgcgaggacctgcgcatcgtggtgatgtcggcc
accctggatggcgagcggctggcgcagttcctcgatgcgccccggttgagcagcgaaggc
cgcagcttcccggtgacgatcgcgcatttccccgcacgccgcgacgaagcgctggaaccg
caggcgcgccgtgcggtggagcaggcgttggccgagcatcccggcgatgtgctggtgttc
ctgcccggccagcgcgagatcgcgcgcgtgcagaccgcgctgcagtccgtgctcgatccc
gccgtgcaggtattgccgctgcacggcgaactgccggtggatcagcaatcgcaggtgctg
cagcccgatcccggcggccgccgccgcgtggtgctggccaccaacgtggccgagtcgtcg
gtgaccctgcccggcgtgcgcgtggtgatcgacgcggggctggcccgcgagccgcgctac
gaccccaacagcggctttgcgcgcctggacgtggtgaacatcgcgcaggcctcggcggac
cagcgtgccggccgcgcaggccgtgtggccgagggctgggcgtggcggttgtggccgcag
tcgcagcggttggaggcacagcgccggcccgagatcgcgcaggtggaactggcctcgctg
gcgctggagctggccgcgtggggcagcgacgacctgcgcttcgtggatacaccgccggcc
ggtgcactggccgccgcccgtgaactgctgcagcgcctgggtgcgctcagcgacagcggc
acgctgaccccgctgggccggcgcatgctgaccctcggtacgcatccacggctggcggcg
atgctgatggcggcaggtgccggtgtggaacaggccctggcctgcgatctggccgcgctg
gtggaagcgcgcgatccgctgcggcaagggggtgatgcactcgccgcgcggtggcgtgcg
ctggcggcgttccgccaggggcgcgtgccacccgatgccaaccgcggcggcctggtgacc
atcgatgcggccagcaagcaatggcggcgacgcctgcgctgcgaggtcgcgccccctgcg
tcggtggaggcgcatcaactcggtgacctgctcgcccatgcatttccggaccggatcgct
gcccgccatccgaccgatccgctgcgctatctgctggccaatggccgcagcgcgcgcctg
ttcgatcccagcgatctgcgtggcgagccgtggctggtcgcggtggagctgcgctacgag
gcacgcgacgcgttgctgctgcgcgccgcgccggtggacgagaaccgcctgcgccgtgat
tttcccgatcgcttcaaacaggaagacgtggtgcgctgggatggtgaaaagcgtgccttg
gtcgcgcgacgggaaacccgcttcgaccgcatcgtgctggacagccgctcggccggccgc
gtggatcctgcacaagccgcgcaggcactgactgaagcggttgccgaactcgggctggat
gcgttgccgtggaccgaggggctgcgccagtggcaggcacgtgtactggcggtgcgggca
tggatgccggagctggaactgccggatgtctccgacgcagcgctgttggcgacgctgccg
acctggctgacccccgcgttcaacggcaggacccgcctggacgcgctcgacgaatccacc
ttgggtgaagcgctgaaatcaccgctgccgtgggcgcaacgccagctgatcgatcgccat
gccccggtgcgcattaccgtgccttccgggatggagcgcccgatccactacgcgctcgat
gccgatggcgtcacgccgcaggcgccggtgctggccgtcaaactgcaggaactgttcggc
ctgagcgacaccccgcgcatcgccgatggccgcatcccgctgacgctgcatctgctttcc
ccaggcggccggccgctgcaggtcacccaggacctgcgcaatttctgggcgaacacctat
gccgaagtgaagaaggaaatgaagggccgctatcccaagcatccgtggccggatgatccg
tggacggccacggccacgcaccgggccaagccgcgcgggacgtga
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