Stenotrophomonas sp. LM091: BIZ42_09655
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Entry
BIZ42_09655 CDS
T04630
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BIZ42_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_09655
Enzymes [BR:
slm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BIZ42_09655
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BIZ42_09655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
GDP_Man_Dehyd
Motif
Other DBs
NCBI-ProteinID:
AOX62448
LinkDB
All DBs
Position
2224043..2226628
Genome browser
AA seq
861 aa
AA seq
DB search
MSLQEYRRKRRFDGTPEPDAERRGAPARRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVEVEDHPLSYATFAGDIPSGHYGAGHVDVYDHGTWACDGDPLEAIAA
GKVDFVLHGERLKGGWKLVRTAMKGKQHQWLLIKRDDEEARDMEADDLLEAPPKAGKRAS
AKKVAAANASKAAPARKTAPAKAATGSPARKAERKADARWSKRALALQGARATPYPHDFK
PQLTDHRATAPDGEQWLHEIKWDGYRLLADVRDGVVSLRSRGGLNWTDDFPEVVQAIERL
PVRDLRLDGELVVLDAQGRSDFTALQKVIDGTAKQPLRYVVFDMPGIAGVDVSRVPLLER
KALLKDLLGATPGTLAYSDHVRDHGPAVFAASGEAGFEGIISKRIDAPYVNARSRDWIKI
KHENTDEFLIVGYTEPKGSRSGFGSLLMATPDKRGLRYVGRVGTGFDDAALRALTRQLTP
LTVKDAVVELPAHVPFTARSVHWVKPVLVAEVAFRGWAKEGLLRQASFKRLREDKHAKDL
GATATAVSPTPSTTAASATPAGTRGRKKAATAAQDESTVTISHPERVVFAKAKITKGEVA
DYYRRMARWILPEVAHRPLSVLRCPDGVDTPCFFQKHHGTGLGGAVKAIPLEQKSGREDY
LYIEDVEGLLQLVQMNTLELHPWGATVDDPEHPDRLVFDLDPGEGVNWTQIKAAARDVRA
RLQEAGLESFVRLSGGKGVHVVVPLQPKADWAQAKDFCEAFAQAMATQAPERYVATMSKA
KRDGVIFIDWLRNARGATSVSSWSLRARPGAGVAVPLRWEELGRIAAPDAFPMAKALQRA
ERLKQDPWEGIEQVKQVLPGS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctgcaggaataccgccgcaaacgccgcttcgacggcacccccgagccggatgcc
gagcgccgcggcgcgccggcgcggcggccgatcttcgtggtgcagctgcaccacgccagc
tcgcgccattacgacttccggctggaagccgatggcgtgctcaagagctgggcggtgccg
aaaggcccctcgctgcgcgttggtgaaaaacggctcgcggtggaggttgaagatcacccg
ctgtcctacgcgacgtttgccggcgatatccccagcggccattacggcgccgggcatgtg
gacgtctacgaccacggcacctgggcctgcgatggcgatccgctggaggcgatcgcggcc
ggcaaggtggacttcgtcctgcacggtgaacggctcaagggcggctggaaactggtgcgc
actgcgatgaagggcaagcagcaccagtggctgctgatcaaacgcgatgacgaggaggcc
agggatatggaggctgatgatctgttggaggcaccgcccaaggcaggcaagcgcgcaagc
gcgaagaaggttgccgctgccaacgccagcaaagctgccccggcaaggaagaccgcgccg
gccaaggccgcgacaggtagccccgcacgcaaggccgaacgcaaggcggacgcgcgctgg
tccaagcgcgcgctggccctgcagggcgctcgcgcaacgccctacccgcatgacttcaag
cctcagctgaccgatcaccgtgccaccgcaccggacggcgagcagtggctgcacgagatc
aaatgggacggttatcgcctgctggccgatgtgcgcgatggcgtggtgtcgctgcgctcg
cgcggcgggttgaactggaccgacgattttcccgaggtggtgcaggcgatcgagcggctg
ccggtgcgcgatctacgcctggacggtgagctggtggtgctggatgcgcagggccgcagt
gactttactgcgttgcagaaggtcatcgatggcaccgccaaacagccgctgcgctatgtg
gtgttcgacatgcccggcatcgcgggggtggacgtcagccgggtgcccctgctggagcgc
aaggccctgctcaaggacctgctgggcgccacgccgggcaccctggcctacagcgaccac
gtgcgcgaccacggcccggcggtgttcgccgccagtggcgaggccggcttcgaaggcatc
atcagcaagcggatcgacgcgccctacgtcaacgcgcgttcgcgcgactggatcaagatc
aagcacgagaacaccgatgagttcctcatcgtcggctataccgaaccgaagggatcgcgc
agtggcttcggctcgctgctgatggccaccccggacaagcgcgggctacggtatgtcggc
cgcgtcggcacgggcttcgacgatgccgcgctgcgcgcgctgaccaggcagctgaccccg
ctgacggtgaaggacgcggtggtcgagctgcctgcgcatgtgccgttcaccgcacgcagc
gtgcactgggtgaagccggtgctggtggcggaggtcgcattccgtggatgggccaaggaa
gggttgctgcgccaggccagcttcaagcggctgcgcgaggacaaacacgccaaggatctg
ggcgccacagctacggccgtctcccccaccccctccactaccgcggcctccgccaccccg
gccggaacgcgcgggcgaaagaaggcagctacggccgcgcaggacgagagcacggtgacg
atcagccatcccgagcgcgtggtgttcgccaaggcgaaaatcaccaagggcgaggtggcc
gactactaccggcgcatggcgcgctggatcctgcccgaggtggcgcaccgcccgctgtcg
gtgctgcgctgcccggacggggtggacacgccctgcttcttccagaaacaccacggcacc
ggcctgggcggtgcggtcaaggcgattccgctggagcagaagagcgggcgcgaagactac
ctctacatcgaggacgtggagggcctgctgcagctggtgcagatgaacaccctggagctg
catccctggggcgccaccgtcgatgaccccgaacatccggaccggctggtgttcgatctg
gatcccggcgaaggcgtgaactggacgcagatcaaggccgccgcacgcgatgtgcgcgcg
cgcctgcaggaagccgggctggagagcttcgtccggctttccggcggcaagggcgtgcac
gtggtggtgccgctgcagcccaaggccgactgggcgcaggccaaggacttctgcgaggcg
tttgcgcaggccatggccacccaggcaccggagcgctatgtggcgacgatgagcaaggcc
aagcgcgatggggtgatcttcatcgattggctgcgcaatgcgcgcggcgccaccagtgtg
agctcgtggtcgctgcgggcgcggcccggagccggcgtggcggtgccgctgcgctgggaa
gagctgggccgcatcgcggcgccggacgccttcccgatggcgaaggcgctgcagcgtgcg
gagcggctgaagcaggacccgtgggaaggcatcgagcaggtgaagcaggtgctgcccggc
agctga
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