Stenotrophomonas sp. LM091: BIZ42_09945
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Entry
BIZ42_09945 CDS
T04630
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slm
Stenotrophomonas sp. LM091
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slm03032
]
BIZ42_09945
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_09945
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BIZ42_09945
DNA replication proteins [BR:
slm03032
]
Prokaryotic type
DNA Topoisomerases
BIZ42_09945
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BIZ42_09945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
AOX62500
LinkDB
All DBs
Position
2298552..2299697
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AA seq
381 aa
AA seq
DB search
MRCLCCVIDAVPHLRRRHCASLIRVASMSPSRTVTPEAAAARQAGLRYVSDELPGIARRK
AGKGFAYRDADGAAVRDAATLARIRALAIPPAYTDVWICALPNGHLQATGRDARGRKQYR
YHADWARVRGDGKFDRIIAFGTALPTLRRRLRRDLKLPGFPRDKVLAIVVALLAQTLVRV
GNEVYARDNRSYGLTTLRNRHLALVKGGRAQMRFRGKSGQAHEVDVDDRELVKLIRGCQQ
LPGQALFQYRDDDGAVQPVDSGMVNDYLHDAMGEDFSAKDFRTWGGTLEAIRQLAVTELP
EPSSERALAALQKQVVCEVANLLGNTPSVCRKAYIDPCVFDGWRAGSLKALAGLRGERQW
ELATLKVLKAARRTVRRARAG
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
gtgaggtgtttgtgttgcgttattgacgcggtgccgcacctgcggcggcgacactgcgct
tccctgatccgcgtcgcgtccatgagcccgagccgcactgtcacccccgaagccgccgct
gcccgccaggccggcctgcgttacgtcagcgatgaactgcccggcatcgcccgccgcaag
gccggcaagggcttcgcctaccgcgatgccgacggcgcggcggtgcgcgatgcggccacc
ctggcccggatccgcgcgctggccatcccgccggcctacaccgacgtgtggatctgcgcg
ctgcccaacggccatctgcaggccaccggccgcgatgcgcgagggcgcaagcagtaccgt
taccacgcggattgggcgcgggtgaggggcgatggcaagttcgatcgcatcattgccttt
ggtactgccctgcccacgctgcgccggcgcctgcgccgcgatctgaagctgcccggcttc
ccacgcgacaaggtgctggcgatcgtggtggcgctgctggcacagacgctggtgcgcgtt
ggcaatgaagtctatgcacgtgacaaccgttcttacgggctgaccacgctacgcaaccgc
cacctcgcgctggtcaagggcggccgggcgcagatgcgcttccggggcaagtccgggcag
gcgcatgaggtggatgtggatgatcgcgaactggtcaagctgatccgtggctgccagcag
ctgcccgggcaggcgctgttccagtatcgcgatgacgatggcgcggtccaaccggtggac
tcgggcatggtcaacgactatctgcacgatgcgatgggcgaggatttcagcgccaaggac
ttccgcacctggggcggcacgctggaggcgatccgtcagcttgccgtgaccgagctgccc
gaaccctccagtgagcgcgcgctggcagcattgcagaaacaggtggtatgcgaggtcgcc
aacctgctgggcaacacaccgtcggtgtgccgcaaggcgtatatcgatccttgcgtattc
gatggctggcgggcgggctcattgaaggcgcttgccggcctgcgtggcgagcgccagtgg
gaactggccacgctgaaagtactcaaagccgcgcggcgcaccgtccggcgtgcccgcgcg
ggatga
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