Stenotrophomonas sp. LM091: BIZ42_13005
Help
Entry
BIZ42_13005 CDS
T04630
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BIZ42_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slm03021
]
BIZ42_13005
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_13005
Enzymes [BR:
slm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BIZ42_13005
Transcription machinery [BR:
slm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BIZ42_13005
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BIZ42_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AOX63041
LinkDB
All DBs
Position
2978973..2983220
Genome browser
AA seq
1415 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSLVNKKGEGMAFANIAEVKRAYDNR
VVELHARVKVRITEVVTDEEGNKQNKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKRGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAEGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEDASVQSVKVRSTISCASPFGVCAHCY
GRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVEHASGSLVAVSRSGEMSVLDAHGRERERYKLPYGATITSKDGDAVKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGSQAKDLRPIVR
IVDKNGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQVIVFE
GEHVTKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGTSKFLNGEQAERQRVIEENARLAARNELPARFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDNLRGLKENVIVGRLIPAGTGLAYHANRRRNASGLTDSE
MQTLSGSAPAVAEVAPVAAVAVESTDADQAPGSDE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgctcaacctcttcaaccagcagcgtcagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtacgttcaagccggaacgtgacggcctgttctgcgccgcc
atcttcggaccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggaacgccgccagctgctg
accgaagaacagtacctgcaggcccgccaggaacacggcgacgacttcgatgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcaccatcgacctgcagtcggaaatgacccgc
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgactgaccaagcgc
atcaagctggtcgaggccttcctcgagtcgggcaaccgcccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttc
gcgacctccgatctgaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgagctgaacgcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcacttgagctgttcaagccgttc
gtcttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgatgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggccttcgagccggtc
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggtctgtactacatgacccgctcgctggtgaacaag
aagggcgagggcatggccttcgccaacatcgccgaagtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgcacgcgtcaaggtccgcatcaccgaagtggtgaccgacgaggaa
ggcaacaagcagaacaagacctcgatcgtggacaccacgatcggtcgcgccctgctggct
gaaatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgtcagctgggcttgaaggacacggtcgtgttc
gccgataagctgatgtacaccggcttcgcctacgcaacccgcgcgggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagcgcggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaatgaacgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtggtcaatgccgaaggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggcgcgtccggatggctcgatcatcgaaacgcccatcaag
gcgaacttccgtgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagacggcgaactcgggttacctgacccgccgtctg
gtcgacgtggcgcaggacgtggtcatcaccgaagtggattgcggtaccaccgaaggcctg
accatgaccccgatcgtggaaggcggcgacgtcgtggagccgttgaaggaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcaacgacgaagatccgatcgtgacc
cgcaacaccctgctcgacgagcagtgggtggccaagctggaagacgcctcggtgcagtcg
gtcaaggtccgttcgaccatcagctgcgcctcgccgttcggcgtctgcgcacactgctac
ggtcgcgatctggcccgtggccacatcgtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgagctgctgcggtcgacaacatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctgaagtcggtcgagcacgccagcggttcgctggtggcggtctcgcgttcg
ggtgaaatgtcggtgctcgatgcccacggccgtgagcgtgagcgttacaagctgccgtac
ggtgcgaccatcacgtccaaggacggcgatgcggtcaaggctggccagaccgtggccaac
tgggacccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctggcatcgcgt
gaaatcaccgatccgaagcgtcgtggttcgcaggccaaggatctgcgcccgatcgtccgc
atcgtggacaagaacggcaacgacctgaccattccgaacacggatctgccggcccagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgccgccgtcggcgtgggtgac
gtggtcgccaagatcccgcaggaagcgtccaaaacccgtgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggaacacgaagagctgatcccgaagtaccgtcaggtgatcgtcttcgaa
ggcgagcacgtgaccaagggcgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggtgtcgaaccgctggcggcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcaccagcaagttcctgaatggcgagcaggcc
gagcgccagcgcgtcatcgaggaaaatgcccgcctggccgcccgcaacgagctgccggcc
cgtttcgatccggtcctgctgggtatcaccaaggcctcgctggcgaccgaatcgttcatc
tcggcggcgtcgttccaggaaaccacccgcgtgctgaccgaagcggccgttcgcggcacc
tcggacaacctgcgcggcctgaaggaaaacgtcatcgtcggccgtctgatcccggccggt
acgggcctggcttaccacgccaaccgtcgtcgcaacgcctccgggctgaccgactcggaa
atgcagaccctgtccggcagcgcgccggccgtggctgaggtggccccggtggccgccgtg
gcggtggaatcgaccgacgccgaccaggcgccgggcagcgacgagtaa
DBGET
integrated database retrieval system
