Stenotrophomonas sp. LM091: BIZ42_15230
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Entry
BIZ42_15230 CDS
T04630
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIZ42_15230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_15230
03009 Ribosome biogenesis [BR:
slm03009
]
BIZ42_15230
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BIZ42_15230
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIZ42_15230
Ribosome biogenesis [BR:
slm03009
]
Prokaryotic type
rRNA helicases
BIZ42_15230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOX63432
LinkDB
All DBs
Position
3451647..3453590
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AA seq
647 aa
AA seq
DB search
MSQDSTTPLRFADLGLSDAVMQAVATVGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNLDFNQTKPQVLVLAPTRELAIQVAEAFQTYSSGIPGFRVLPVYGGQPYGQ
QLQALRRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PETRQVALFSATMPSQIRRIAQTYLKNPAEVTIVSKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFSRTKAATEELAEKLQARGLAAAAINGDMQQAQRERTIGMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFATPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRITKFMSRISDALDAGGTEFYRDLLQKLEGEKNVP
AIDIAAALAKLLQGDSPFLLTPPVRGAREERAPHQRNERSNDRGERPARFEPRFERGPRR
EDDRGPRPPRPEGDFGSSEGGFERAPRRDIAPRGAAEPGMETFRIEVGHVHGVKPGNIVG
AIANEAGLESRFIGRIDIHDDFSVLDLPAEMPQDLLTHLKKVWVSGQQLQMRKVEPGEDL
TPSPRPAFKPKFGQGKPRGPGGPRSGPGGNDRPPRRDGFKPRGPRNF
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattccaccacgccgctgcggtttgcagacctcggcctgtccgacgccgtc
atgcaggcggtcgccaccgtcggctatgaaaccccctcgccgatccaggccgccaccatt
cccgccatgctggaagggcgcgacgtgctgggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacctcgatttcaaccagaccaagccgcaggtg
ctggtgctggcaccgacccgcgaactggccatccaggtcgccgaggcgttccagacctat
tcctccggcattccgggcttccgcgtgctgccggtgtacggcggccagccgtatggccag
cagctgcaggccctgcgccgtggcgtgcacgtcatcgtcggtaccccgggccgtgtgatc
gatcacctcgagcgcggcaccctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggagacccgccaggtcgccctgttctcggccaccatgccgtcgcagatccgccgcatc
gcgcagacctacctgaagaacccggctgaagtcaccatcgtcagcaagacgacgacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtggaacccttcgacgcgatgatcatcttctcgcgtaccaaggcggcc
accgaagagctggccgagaagctgcaggcacgtggcctggctgcggccgccatcaacggc
gacatgcagcaggcccagcgcgaacgcaccatcggcatgctcaaggaaggcaagctggac
atcctggtggccaccgacgtggccgcccgtggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggt
cgtgccggccgcaccggtgacgcgatcctgttcgccaccccgcgcgaaaagggcatgctg
cgtgcgatcgagcgcgccacccgccagccgatcgaagaaatgcagctgccgagcgtggac
gcggtcaacgatacccgcatcaccaagttcatgagccgcatcagcgatgccctggatgcc
ggtggtaccgagttctaccgcgacctgctgcagaagctggaaggcgagaagaacgtgccg
gcgatcgacatcgccgccgcactggccaagctgctgcagggcgattcgccgttcctgctg
accccgccggtgcgtggtgcccgtgaagagcgcgcgccgcaccagcgcaacgagcgcagc
aacgaccgtggcgagcgcccggcccgtttcgaaccgcgcttcgagcgtggcccgcgtcgt
gaagacgaccgcggcccgcgcccgccgcgtccggaaggcgacttcggcagcagcgagggc
ggcttcgagcgtgccccgcgccgtgacatcgccccgcgcggtgccgccgagccgggcatg
gaaaccttccgcatcgaagtgggccacgtgcacggcgtgaagccgggcaacatcgtcggc
gcgatcgccaacgaagccggtctggaaagccgcttcatcggccgcatcgacatccacgac
gacttctcggtgctggacctgccggccgaaatgccgcaggacctgctgacccacctgaag
aaggtgtgggtctcgggccagcagcttcagatgcgcaaggtcgagccgggtgaagacctg
accccgtccccgcgtccggcgttcaagccgaagttcggccagggcaagccgcgtggtccg
ggtggcccgcgcagcggccccggcggcaacgaccgtccgccgcgccgtgatggcttcaag
ccgcgcggtccgcgcaacttctga
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