Stenotrophomonas sp. LM091: BIZ42_15355
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Entry
BIZ42_15355 CDS
T04630
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03030
DNA replication
slm03430
Mismatch repair
slm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BIZ42_15355
03430 Mismatch repair
BIZ42_15355
03440 Homologous recombination
BIZ42_15355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slm03032
]
BIZ42_15355
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_15355
Enzymes [BR:
slm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BIZ42_15355
DNA replication proteins [BR:
slm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BIZ42_15355
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BIZ42_15355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Ferredoxin_N
Motif
Other DBs
NCBI-ProteinID:
AOX63453
LinkDB
All DBs
Position
complement(3480836..3484417)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRAVELKLPALAVTDLNN
LFALVKFYKAAETVGIKPIAGADIMIAEEGMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPEWLKAGCHNLFALAGRDSLAGRLAGDGRHDLAEQQLADWQRVFGDGLHL
ELTRTGRDGEEAFNQFALQAAGQRGLPVIASNDVRFLQPEDFNAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSAEDMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPEDET
LDSWICSESRKGLEARLEKNPLAPGKTRADYFERLEFELATIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPIPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYHNEDDVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLA
EFCPLFAEHDEGGRGRNPVTQFDKNDVEEIGLVKFDFLGLRTLTIIDWAVKAINKRHERA
GIPPVDITALPLDDVPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKDGVVEAKADAIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLAEVRNLGLTVLPPRVNESAYMFEA
SSADTIVYGLGAIKGVGQGACEAIVEERQRGGRYASLLDFCMRAESGKLNRRTLEAMINC
GAMDGLGKNRASLMLQLPEVLKATDQMAREKASGQNSLFGAPDPVTTAMQLELPEAKEWA
LGQLLEGERETLGFYLSGHPFDPYADDVKDLVGTDLGMLEKLIPPARPSKDGEKRAWRQE
TPVILAGLVVGVRRKGESQIFMQLEDGKGRVECSAFTDGLAEFGHLMTKDRILVVKGGLR
EDEFNGGYALRIRQVWDYEDICANYATRLSLRLDLRQDGAVWNRINALLDRHRPGRTPLR
LDLLLGSAQGPVAGMLDVAGEIAVRVDSQLVDALRADPAVRTVKVRYSPPWAN
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgtttcgtacatctccacgtccacaccgaattttcgctggcggattcg
accatccgtgtcccggcgaagccggatcaggctgacccgaaaaaagccaagcaggccaac
ctgctcagccgcgcggtcgaactgaagctgcctgcactggcagtgacggatctcaacaac
ctgttcgcgctggtcaagttctacaaagccgccgaaaccgtgggcatcaagcccatcgcc
ggcgcggacatcatgatcgccgaagaaggcatgacgccctggcgcatgaccctgctctgc
cgcgaccgcgaaggctacctcagcctctccaggctgctcacccgcgcctggatggaaggc
caccgccccgaaggcggcgtcgctgtgcacccggagtggctcaaagccggctgccacaac
ctgtttgcactggccggccgcgacagccttgccggtcgcctggccggcgatggccgccat
gacctggccgagcagcaactggccgactggcagcgcgtgttcggcgatggcctgcacctg
gagctgacccgtaccggccgcgacggcgaagaagccttcaaccagttcgccctgcaggcc
gccggccagcgcggcctgccggtgatcgccagcaacgatgtgcgcttcctgcagccggaa
gacttcaacgcccacgaagcccgcgtgtgcatctcctccggccgcgtgctggacgacccc
aagcgcccgcgcgactacagcgaccagcagtacctcaagtccgccgaggacatgtgcgcg
ctgtttgccgacatccccgacgcgatcgacaacacgcttgcgctggccgagcgctgcaac
atcgaaatgcgcctgggcacctacttcctgcccaactacccggtgcccgaggacgaaacc
ctcgacagctggatctgcagcgaatcgcgcaagggcctggaagcgcgcctcgaaaagaat
ccgctggcgccgggcaagacccgcgccgattatttcgagcgcctcgagttcgaactggcc
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggaaagaaccagggcattccgatcggcccgggccgcggttccggtgccggctcgctggtc
gcctgggcgctgcagatcaccgatctggatccgatcccgtacaacctgctgttcgagcgc
ttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtcatcgactacgtcgcgcgtaaatacgggcgtgaccgggtcagccagatc
atcacctacggcaccatggcggccaaggccgtggtgcgcgactccggccgcgtgctcggc
ttcccgtacggcctggtcgacggcgtttccaagctgatcccgaacatcctgggcatctcg
ctcaaggatgcgatgggcgaaggcaaggattcggaaatggcctcgccggagctgatccag
cgctaccataacgaagatgatgtccgcgacctgatcgacctggcacgccagctcgaagac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgagccgctggcc
gaattctgcccgctgttcgccgaacatgacgaaggcggccgtggccgcaacccggtcacc
cagttcgacaagaacgacgtcgaagaaatcggcctggtgaagttcgacttcctcggcctg
cgcacgctgaccatcatcgactgggcggtcaaggcgatcaacaagcgccacgaacgcgcc
ggcattccgccggtggacatcaccgcgctgccgctggatgacgtcccgacctacaaggac
atcttcgccaacggcaacaccggcgcggtattccagttcgaatcctcgggcatgcgccgc
ctgctgaaggacgcgcgccccgaccgcttcgaagacctcatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgattccctccttcaacgcgcgtaagcacgggcaggaagag
atcatctaccccgatccgcgcaccgaagcgatcctgaaagacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtgggcggttactcgctcggcggcgcc
gacctgctgcgccgcgcgatgggcaagaaggtgccggccgaaatggccaagcaccgcgag
atcttccgcgaaggtgcggccaaggacggcgtcgtcgaagccaaggccgacgcgatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtcagctaccagaccgcctggctcaagcgccattacccggccgagttcatggccgcg
acgctgtcctcggacatggacaacaccgacaaggtggtcggcttcctcgccgaagtgcgc
aacctcggcctgaccgtgctgccgccgcgcgtgaacgaatcggcctacatgttcgaagcc
tccagcgccgacaccatcgtgtatggcctgggcgcgatcaagggcgtcggccaaggtgcc
tgcgaagcgatcgtggaggaacgccagcgtggcggccgctatgcatcgctgctggatttc
tgcatgcgcgccgaatccggcaagctcaaccgccgcacgctcgaagcgatgatcaactgc
ggtgcgatggacgggctcggcaagaaccgcgcttcgctgatgctgcagctgcccgaagtg
ctcaaggccaccgaccagatggcacgcgagaaggcctccggccagaactcgttgttcggg
gcgcccgatccggtcaccaccgcgatgcagctggaactgcccgaggccaaagagtgggcg
ctgggccagctgctggaaggcgaacgcgaaacgctgggtttctacctcagcggccacccg
ttcgatccctacgccgatgacgtcaaggatctggtcggcaccgacctgggcatgctcgag
aagctgatcccgccggcacgcccgagcaaggatggcgagaagcgtgcctggcgccaggaa
accccggtgatcctcgccggcctggtggtcggggtgcgccgcaagggcgagagccagatc
ttcatgcagctcgaagacggcaagggccgcgtggagtgcagcgccttcaccgatggcctg
gccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggcggcctgcgc
gaagacgagttcaacggtggctacgcgctgcgcatccgccaggtctgggattacgaagac
atctgcgccaactacgccacgcgcctgtcgctgcggctggacctgcgccaggacggcgcc
gtgtggaaccgcatcaacgccctgctcgaccgccaccgcccgggccgcacgccgctgcgc
ctggacctgctgctcggctcggcgcagggcccggtggccggcatgctcgatgtggccggt
gagatcgccgtgcgcgtggacagccagctggtcgatgcgctgcgtgccgaccctgcggta
cgcacggtgaaagtgcgctacagcccgccctgggcgaactga
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