Salipaludibacillus sp. LMS25: MM221_00040
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Entry
MM221_00040 CDS
T08296
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM221_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slms03019
]
MM221_00040
03009 Ribosome biogenesis [BR:
slms03009
]
MM221_00040
Enzymes [BR:
slms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM221_00040
Messenger RNA biogenesis [BR:
slms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM221_00040
Ribosome biogenesis [BR:
slms03009
]
Prokaryotic type
rRNA helicases
MM221_00040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
DUF4136
AAA_22
Helicase_RecD
EELM2
Motif
Other DBs
NCBI-ProteinID:
UTR15031
LinkDB
All DBs
Position
complement(9069..10652)
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AA seq
527 aa
AA seq
DB search
MMKFEDFQISDDLKRAIKDMGFEAPSPIQEKVIPEILKKQDVIGQAQTGTGKTAAFGIPL
LEHVTTSDHIQSLILTPTRELAIQVAGELQKLSKFKKVTTLPVYGGQSIGQQIKSLKRGV
DIVVGTPGRILDHLNRKTLKLHNVHTLILDEADEMLDMGFIEDIEKILKQVNRERQTLLF
SATMPPPIRKLSNKYMQQPKQVTISKGEVTAPSINQVYYKVLEKNKLDSLCRVIDSETID
LGIIFCRTKKGVAELTEALQARGYQADGLHGDLTQSQRDMVMKKFRDSSIEFLIATDVAA
RGIDVQNVSHVINYDIPQDPESYVHRIGRTGRAGRDGIALTLVTPREMKHLRSIEAEIKM
TIPSQSLPSVEEVVEKQQHVWKGQIIDLIENDDEEANLYDALVTDLLDQYPAEKVVTSLM
KLAFYSRDNLNDDGYDFGETGAQKGMTRFFINVGRNVDLTPKKLVDEVARLIGVNPKSVG
KIDIFENFTFMEVPEEVAPFVYEGLKYARVSGARINLEPAKPRPKRK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaatttgaagacttccaaatatctgacgacctgaaacgggcaattaaagacatg
gggtttgaagccccttcccctattcaagaaaaggtcattccagagattttaaaaaaacaa
gatgtgattggacaggcgcaaactggaacaggaaaaacggccgcttttggaattccgctc
cttgagcatgtgacaacaagtgatcatattcaatctcttattttaacacctacgagggaa
ctagctattcaagtagcaggcgagcttcaaaagctctcgaaattcaaaaaagtgacaacg
ttgcctgtatacggtggtcagtcaataggccagcaaattaaatcgttaaagcgaggggtg
gacattgtcgttggaacaccaggaagaattctcgaccatctcaatcgaaaaacacttaaa
ttacacaacgtacacactctcattttagatgaagctgatgaaatgcttgatatgggattc
attgaggatatagaaaaaatcttgaaacaagtaaatcgtgagcggcaaacattgcttttc
tcagctacgatgcccccaccgattcgcaaattatctaataaatatatgcaacagcctaaa
caagtaacgattagtaaaggagaagtaacggctccttcaattaatcaagtttattataaa
gtgctagaaaaaaataaattggattctctttgtcgtgtgatagacagtgaaacgatcgac
ttagggatcatcttttgtcgaacgaaaaaaggtgttgccgagttgacggaggcacttcaa
gcgagaggctatcaagcagatggtttacatggtgacctaacacaatctcaacgagacatg
gttatgaagaagtttcgcgactcttctattgagttcttaattgctacagatgtagcggct
cgtggtatagacgtacaaaatgttagtcatgttataaattatgatattccacaagatcca
gaaagctatgtacaccgaattggtcgaacgggtcgtgctggccgagatggtattgcattg
actctcgttacgccaagagaaatgaagcatctccgttccatcgaggctgaaattaaaatg
acgatcccatctcaaagtctaccttcagttgaagaagttgttgaaaaacagcaacatgtg
tggaaaggacaaattatcgatttaattgaaaacgatgatgaagaagcgaacttatacgat
gctctcgtaacggatctgctcgatcaatatccagcggaaaaagtcgtcacatcccttatg
aagctcgcattttacagccgtgataatttaaatgatgatgggtatgacttcggtgaaact
ggcgcacaaaaaggcatgacacgtttcttcattaatgtaggaagaaatgttgacttaacg
ccaaaaaaactagtggatgaagtggcaaggctaattggagttaaccctaaatcagtaggt
aaaattgatatttttgaaaatttcacttttatggaagtacctgaagaagtagcgccgttt
gtctatgaagggttaaaatacgctcgagtaagtggtgcgaggattaacctagaaccggca
aaacctcgtccaaaacggaaataa
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