Salipaludibacillus sp. LMS25: MM221_06940
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Entry
MM221_06940 CDS
T08296
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM221_06940 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slms03021
]
MM221_06940 (rho)
03019 Messenger RNA biogenesis [BR:
slms03019
]
MM221_06940 (rho)
Transcription machinery [BR:
slms03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MM221_06940 (rho)
Messenger RNA biogenesis [BR:
slms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MM221_06940 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
Mor
AAA
AAA_22
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UTR16970
LinkDB
All DBs
Position
complement(1501906..1503189)
Genome browser
AA seq
427 aa
AA seq
DB search
MGVTLKEMEHMKLKELYELAKEHKVQYYSQLTKKELMFAIFKKQAENEDLMFMEGILEII
TTEGFGFLRSNTYKPSSQDIYISASQIRRFQLRNGDTVSGKVRKPKENERYYGLLQVAAV
NGEDPEKASERPHFPQLTPLYPEKKLTLEYQSNMIASRVVDMISPVGFGQRGLIVAPPKA
GKTLLLKEVANSIAKNHPDVELMVLLIDERPEEVTDMERSVKGEVVSSTFDEVPENHIKV
AELVLDRAMRLVEAKKDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPASFHRPKRFFG
AARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMELHLDRKLAERRIYPAIDIRR
SSTRREELLLPKNQIENLWAIRKTMNDQPDFLDRFLKKVRNTETNDEFFNTFEKEKAGNA
RPRNTTV
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgactttaaaagaaatggagcatatgaagctcaaagaattatatgaactggca
aaagagcacaaagttcaatattatagccaacttacaaaaaaagaacttatgtttgctatt
ttcaagaaacaagctgaaaatgaagatctgatgtttatggaagggatccttgaaattatt
acaactgaaggctttggctttcttcgatccaatacgtataaacctagttctcaggacatt
tatatctctgcatcccagatacgcaggtttcagttaagaaatggtgatacggtttctggg
aaagttcgcaaaccgaaagaaaatgaacggtattatggtctgctacaagtagccgctgtc
aatggggaagatccggaaaaagcaagtgaacgaccacatttccctcaattaacaccttta
taccccgagaaaaaattgactcttgaataccaatcgaatatgatcgcttcccgtgtggta
gatatgatttccccagtgggttttgggcagcgtgggttgattgtcgccccgcctaaagcg
ggaaaaacactcttattaaaagaagtagctaatagtatagcgaaaaatcatccagatgtt
gagttgatggttttactcattgatgagcgaccggaagaagtgacagatatggagcggtct
gtgaagggcgaagttgttagctccacatttgatgaagtgccagaaaaccatattaaagtg
gctgaacttgtgttagatcgcgccatgcgtcttgtggaagctaaaaaagatgttgtcatt
ctaatggacagtataacgagactagcccgtgcctataacctcgtgattccgccaagtggc
cgtacactgtcaggagggattgaccctgctagcttccataggccaaagcgtttcttcggg
gcagcaagaaacattgaagaaggcggaagtttaactattttagccactgcgctcgttgag
acgggctctcggatggatgacgtcatttatgaagagtttaaagggactggaaatatggaa
ctccacctggaccgtaaattagcagaacgtcgaatctacccggccattgacatacgacgg
tctagtacacgtcgcgaagagttgcttctccctaaaaaccagatcgaaaatttatgggct
attcgaaaaacgatgaatgaccaaccagatttccttgatcgttttcttaaaaaagttcgt
aatacagaaacgaatgacgaattttttaatacatttgaaaaagaaaaagcaggaaacgcc
cgccctagaaatacgactgtgtaa
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