Salipaludibacillus sp. LMS25: MM221_09435
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Entry
MM221_09435 CDS
T08296
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MM221_09435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slms03021
]
MM221_09435 (rpoC)
03400 DNA repair and recombination proteins [BR:
slms03400
]
MM221_09435 (rpoC)
Enzymes [BR:
slms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MM221_09435 (rpoC)
Transcription machinery [BR:
slms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MM221_09435 (rpoC)
DNA repair and recombination proteins [BR:
slms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MM221_09435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTR16708
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All DBs
Position
2046363..2049974
Genome browser
AA seq
1203 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTEPGDTPLELKQLLSEKEYRNYIDKYGRSFTAQMGAEAIRKLLE
DIDLDKEANLLKEELETAQGQRRTRAIKRLEVLEAFRHSGNNPSWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVHPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAESRLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGAIGEGNVYEGPDEAVTAYQNGYVHLHTRIAVP
VKSLNKSNFKAKFEDHLILTSVGKIIFNEILPDSFPYMNEPTATNLEVETPDQYFVPMGT
NIKEEFAQRELVLPFKKGFLGDIIAEVFKKFKISETSIMLDKMKDLGFYHSTKAGITIGV
SDIVVLKDKQDILDSAEEKVQRVMKQFRRGLITEDERYDKVIEIWSRAKDVIQDKLLGTL
DKTNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLKVKAIKEGNEVIESLY
DRLVGRVSFQRIYHPETNDILAERNQNITEDMAKVIEDAGIEIVYIRSAFTCDTKHGVCK
KCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVF
EARNPKGQALISEIEGKITDIKDANEKKEIIVQGAIETRSYTTMYGARLKVNIGDEVKPG
QELTEGSIDPKELLIVSGVHGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVI
DAGDTDVLPGSLVEIHQFNDANREILLRNGRPASGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELVGLKENVIIGKLVPAGTGMQRYRQMAAADTDTVNKEDGKKMTT
AKE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtgaataattttgagtatatgaaaatcggcctggcatcctctgataaaatc
agatcttggtccaggggagaagttaaaaaaccagaaacgattaactatcgtacgttaaaa
cctgaaaaagacggtcttttctgcgaacgtatttttggccctactaaggactgggaatgc
cattgtgggaaatataaacgtgtccgttacaaaggcgttgtatgtgatcgttgtggcgta
gaagtcacaagagctaaagtccgtcgtgagcgcatggggcatattgaactggctgcccct
gtttctcacatctggtattttaaaggtattcctagccgaatgggacttgtgttagatatg
tcaccaaggtcccttgaagaagtgatttattttgcttcttatgttgtgacagagccaggc
gatacaccgttggaactgaaacaacttttatcggaaaaagaatatcgcaactatattgat
aagtacggtcgctccttcacagcccaaatgggtgctgaagctatccgcaaattgctagag
gatattgaccttgataaagaagccaaccttcttaaagaagagttggaaactgcacaagga
cagcgacgaacaagagcaattaaacgacttgaagtgttagaagcattccgtcactctggg
aataacccgtcttggatggtattagatgttctaccagttatcccgccggagttaagaccg
atggttcaattggatggaggacgctttgcgacttctgacttaaacgatttatatcgtcgt
gttattaaccgtaacaatcgcttgaagcgtttgttagacttaggtgcaccaaatattatt
gttcaaaacgaaaaacgtatgctccaagaagctgtagatgcgctcattgataacggacgt
cgtggccgaccggtgacaggaccaggtaaccgcccgctcaaatcgttatcacatatgttg
aaaggtaaacaaggacgtttccgtcaaaacttactcggtaaacgggttgactattcaggt
cgttctgttatcgtggtaggccctcacttaaaaatgtatcaatgtggcttgccgaaagaa
atggctctcgagctatttaaaccatttgttatgaaagaactcgtaagcaaagggcttgca
cacaacattaaaagtgccaagcgaaaagtggagcgtgtccatccagaggtatgggatgtt
ttagaagaagtgattagagagcaccctgttttgcttaaccgtgcacctaccttgcacaga
cttgggattcaagcctttgaaccgatccttgtagaagggcgtgctattaagcttcatccc
ctcgtttgtacagcttataacgccgacttcgatggtgaccaaatggctgtacacgtaccg
ttatctgcagaagcacaagcagagtcccgcttgcttatgcttgcggcacagaacatcttg
aatcctaaagatggaaagcctgttgtaacaccttcacaggatatggttttaggtaactat
tacctgacgttggaacgcaaaggtgcgataggtgaaggtaatgtttacgaagggccggac
gaagctgttacagcttaccaaaatggttatgttcaccttcatacacgaattgctgttccg
gtgaaatcattaaataaatcaaacttcaaagcaaaatttgaagatcatttaatactcact
tccgtaggtaaaattattttcaacgaaattttaccggattcgttcccttatatgaatgaa
ccaacggctactaacttagaagttgaaacacctgatcaatactttgtgccgatgggaacg
aatattaaagaagaatttgcccaaagggaactagtccttccatttaaaaaagggttctta
ggagacattatcgccgaagtatttaaaaagttcaaaatctccgaaacatctatcatgctt
gataagatgaaggatttaggtttctatcactccacgaaagcgggtattacaatcggagta
tctgacatcgtggtgttaaaagataagcaagatattctagatagtgctgaggaaaaagtt
caacgggttatgaagcaattccgccgagggctcattacggaagacgagcgctatgacaaa
gtcattgaaatttggagtagagcgaaagatgtcattcaagataaacttctaggaacttta
gataaaacgaacccgatctttatgatgagtgattcaggagctcgtggtaacgcctctaac
tttacgcaactcgctgggatgcgtggacttatggctaacccatccggacgtattatcgaa
cttccgatcaaatccagtttccgtgaaggcttaactgtccttgaatactttatttcaaca
cacggtgcccgaaaaggtcttgctgatacagccctaaaaacagcggactctggttacttg
acacgtcgtcttgttgatgttgctcaagatgttatcgttcgagaagatgattgtgggaca
gatcgtggcctaaaagttaaagcgattaaagaaggtaacgaagtcatcgaaagcctttat
gatcgtctcgtcggacgtgtctctttccaacgcatttatcatccggaaacgaatgatatc
cttgcagagcgtaaccagaacatcactgaggatatggctaaggttattgaagatgctggt
attgaaatagtctacatccgttctgcctttacatgtgatactaagcatggtgtatgtaaa
aaatgttacggtcgaaaccttgccacaggatctgatgttgaagtgggtgaagcggttggt
attattgccgcgcaatccatcggtgaaccaggtactcagttaacgatgcgtacattccat
acaggcggggtagccggggacgatattacccaaggtttaccgaggattcaggaagtattt
gaagccagaaatcctaaaggacaggcgctgatctctgaaattgaaggtaaaatcaccgac
attaaagatgctaacgagaagaaagaaattattgtccaaggggcaattgaaacccgtagc
tatacgaccatgtatggagcaagactgaaagtaaacataggcgacgaagtaaagccgggg
caagaactgactgaaggttctatcgatccaaaagaactcctcattgtatctggggttcat
ggtgttcaagaataccttctccgtgaagtccaaaaagtttaccggatgcaaggggttgaa
attggtgacaagcacgtcgaagtgatggtgcgtcaaatgttgaggaaaattcgtgttatt
gacgccggagatacagatgtgctaccaggctcacttgtggaaattcaccaattcaatgat
gccaatagagagatccttttacggaatggtcgtcctgcttctggtcgtccggttctactt
ggaattacaaaggcatcgcttgaaaccgattcgttcttgtctgcggcctctttccaggaa
acaacgagagtattaacggatgcggcgatcaaaggaaaacgtgatgaacttgtaggtcta
aaagaaaatgttattatcggaaaactcgttcctgctggtactggtatgcaacgctatcgg
caaatggcagcagctgacacggacaccgtaaacaaagaagacgggaaaaaaatgactact
gccaaagagtaa
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