Salipaludibacillus sp. LMS25: MM221_14950
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Entry
MM221_14950 CDS
T08296
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM221_14950 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slms03019
]
MM221_14950 (recQ)
03400 DNA repair and recombination proteins [BR:
slms03400
]
MM221_14950 (recQ)
Enzymes [BR:
slms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM221_14950 (recQ)
Messenger RNA biogenesis [BR:
slms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM221_14950 (recQ)
DNA repair and recombination proteins [BR:
slms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MM221_14950 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
GerE
EF_TS
Vta1_C
Motif
Other DBs
NCBI-ProteinID:
UTR13898
LinkDB
All DBs
Position
complement(3215098..3217233)
Genome browser
AA seq
711 aa
AA seq
DB search
MLLKAQQRLKEHFGYDHFRSGQKDILEKVFSGNNTMGVMPTGGGKSICYQIPSLLFKGVT
LVISPLISLMKDQVDELQEAGIEATYINSSLQYEDVNERINGIRQGKYKLVYIAPERLES
GQFLNMLRTLPVSLLAIDEAHCLSQWGHDFRPSYLKIPELIHQLNGTPTVLALTATATPE
VTKDISASLHIADRHVVQTGFARENLSFHVIKGIDKDSYIKDYIHQNKTSAGIVYAATRK
EVDKLHQQLSRAGVAVGKYHGGMSSEERQNMQEAFVYDNTRVMVATNAFGMGINKSNVRF
VIHAQMPRNIESYYQEAGRAGRDGEPSECLLLFSPQDIRIQQFLIDQSLMEEERKQQEYE
KLQAMVNYCHTENCLQSYILHYFGDREASPCGQCSECVDNRDTVDVTREAQMVFSCIKRM
NERFGKTMVAQVLVGSANKRVKDFSLHTLSTYGLMKDRTQKDVSQFIDYLTASQFLKMSG
GAYPVLQLTEHAVPVLKGESRVTKKEVRQPVSVDTKTHPLFHTLRELRLALAKEHHVAPY
MIFSDKTLNDMCAQLPETAAQLLDVKGVGNMKVDSYGEPFLQAIQDYVADHPDEKENAFN
GSGDGVGTIKDKTPSFEKTIALFESGQTVEDIAELRHIKETTVKSHLLQAAEEGYHVDFS
SLVDTSHLQLIEDAVDRIGLENGLKPLKEALPEEIDYFTLKVFIHEYLIHS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaaaagcacaacagcggttaaaagaacattttggctatgatcattttagatct
ggccagaaagacatacttgaaaaagttttttcaggaaataacacgatgggggtcatgcct
actggagggggaaaatcgatctgctatcaaattccttctcttctgtttaaaggagtgaca
ctcgtcatttcaccactcatctcgttaatgaaagaccaagtggacgagcttcaagaagca
ggaattgaagcaacctatattaatagttctttgcaatacgaagacgttaacgagcggatt
aatggaatacgtcaagggaaatacaagcttgtttacatcgctcctgaacgattagaatca
gggcaatttctaaacatgcttcgcacattacctgtctcgttattagcaattgatgaagct
cactgcttatcacagtggggccatgatttcagacctagctacttaaaaattcctgaattg
atccatcaattaaacgggacaccaactgttcttgcattaacagccaccgccacaccggaa
gttacaaaagatatttcagcttctctccatatcgctgatcggcatgttgtccaaacaggg
tttgcaagggaaaatttatcgtttcatgtgattaaaggaatagacaaagatagctacatt
aaagactatatccaccagaacaaaacgagcgctgggattgtttacgccgccactcgtaaa
gaagttgacaagcttcatcagcaactcagccgcgctggcgtagctgtcggcaaatatcac
ggggggatgtcttctgaggaacgccagaacatgcaagaagcgttcgtttacgataacacg
cgggtgatggtcgcgacgaatgcctttggaatggggatcaataaatcaaatgtccgtttc
gtcatacatgcacaaatgccaagaaacattgaaagctattatcaagaagcaggacgtgcg
ggtcgagacggtgagccaagtgaatgtctccttttgttcagcccacaggacattcgcatt
caacaatttcttatagatcaatctttaatggaggaagaacggaaacaacaagaatatgaa
aagctacaagcgatggtgaactattgtcacacggaaaattgcctgcaatcttacatcctt
cattactttggtgatcgcgaagcctctccttgtggccaatgctcggaatgtgtggataac
cgtgacactgtcgatgtgacacgtgaagctcaaatggtgttttcatgtattaaacgtatg
aatgaacggtttggtaaaacgatggtggcccaagttctcgtgggctcagcgaataaaagg
gtgaaagatttttccttacacacattatcaacatacggactcatgaaagatcggacacaa
aaagacgtcagccaattcattgattatttaacagcatctcagttcttaaaaatgagtggc
ggcgcttatcctgtccttcaattaactgagcacgccgttcctgttttaaaaggggaatca
cgtgtgactaaaaaagaagtccgtcagcctgtgtccgttgacacgaagacacatccgctc
ttccatacattgcgtgagctgcgacttgcgctggcaaaagaacatcacgttgctccgtac
atgattttctccgataaaacgttaaatgacatgtgtgcgcaactccctgaaaccgctgca
caactgcttgacgttaaaggggttggaaacatgaaagtagacagttacggagaacctttt
cttcaagctattcaagactatgtggcagaccatcctgacgaaaaagaaaacgcctttaat
ggaagtggggacggtgttggcacgattaaagataagacgcctagctttgaaaaaacaatc
gccctttttgagagcggccaaacagttgaagacattgccgaattacgtcacataaaagaa
acaaccgtgaaaagccaccttttacaagcggctgaagaaggctatcatgtggacttttct
tctctcgtagacacgtcccacctccaactgatagaagacgctgtggatcggattggactt
gagaatggccttaaacctctaaaagaagcccttccagaagaaatcgattattttacatta
aaagtatttattcatgagtaccttatccattcttaa
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