Salipaludibacillus sp. LMS25: MM221_15410
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Entry
MM221_15410 CDS
T08296
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
slms
Salipaludibacillus sp. LMS25
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slms03009
]
MM221_15410 (rlmD)
Enzymes [BR:
slms01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MM221_15410 (rlmD)
Ribosome biogenesis [BR:
slms03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MM221_15410 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
UPF0020
Cons_hypoth95
ADH_zinc_N
N6_Mtase
DUF2023
Motif
Other DBs
NCBI-ProteinID:
UTR13984
LinkDB
All DBs
Position
3308424..3309833
Genome browser
AA seq
469 aa
AA seq
DB search
MKRQQQARAPKTELKIKQGQRFPLTIKRLGIDGEGVGFFKRQVVFVPGALPGEEVVCEAV
KVSQKFATGKVVTLRRKSKDRTTPPCAVYEQCGGCQLQHMTYDAQLREKKDIVRQAFERY
TKIDLEQLDFHDTIGMDDPWHYRNKSQMQVGMKDGHVIAGLYSSNSHKLIDITDCIVQHP
QTNTITKVVKQIADDLNIPIYNERKRRGFLRTIVTRVGFKTGEWQLALVTTTKEFPRKEL
FLEELRRRLPDVTSVIQNINKEKTSLIFGDETIVLYGKEKLEERLGDFTFHLSARAFFQL
NPVQTEKLYDAAKQAAELTGQENVVDAYCGVGTIGLWIADKAKELRGMDVIADSINDARK
NAATHGIDHAVYEVGKAETWLPEWEKEGWQADVVIVDPPRTGLDDSLIATLLRTKPSRIV
YVSCNPSTLAKNVKDLVKGGYTLKSLQPVDMFPQTAQVECISQLVLKNS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgacaacaacaggcgagagcgccgaaaacagagttgaaaataaaacagggtcag
cgtttccctttaaccattaaacggctaggaattgatggagaaggtgttggcttctttaaa
cgacaagtcgtcttcgtaccgggggcattaccaggtgaggaagttgtctgtgaagcagtg
aaagtgtcacaaaaatttgctactgggaaagtggtgacgttgcgccggaaatctaaagat
aggacgacaccaccatgtgccgtttatgagcaatgtggcggctgccaactgcaacatatg
acgtatgacgcccagcttcgtgagaaaaaagatattgtgcggcaagcatttgagcgatat
acaaagatagatttagagcagttagattttcacgatacaatcggtatggacgatccttgg
cattatcgcaataaaagccagatgcaagtggggatgaaagatggtcacgtgatcgctgga
ctttacagctcgaacagtcataagctgatcgatattacagactgtatcgtccaacatcca
caaacaaatacgattacgaaggtcgtcaagcaaatcgcagatgatttaaatataccaatt
tacaacgaacggaagcggcggggatttttacggacgatcgttacgcgcgttggcttcaaa
acaggagaatggcagctggctcttgtgacaacaacgaaagagtttccaaggaaggaactg
tttttagaggaattgcgtcgtcgcttgccagatgtcacgtctgttattcaaaacattaac
aaagaaaaaacgtcgcttattttcggtgatgaaaccattgtattatacggaaaagagaag
cttgaggaacggttaggtgattttacctttcatttatcagctcgtgctttttttcaatta
aatcccgttcaaacggagaaactctatgatgctgcgaagcaagcggctgaattaaccggg
caagaaaacgtcgtggatgcttattgcggagtcggaacgattggtctatggatagcagac
aaagcgaaggagcttcgtgggatggatgtcattgccgattcaattaacgatgctcgaaaa
aatgcagcgacacatggcattgatcatgccgtttatgaagtaggtaaagcagaaacatgg
ctgccagaatgggaaaaggaaggctggcaagcagatgtggtcatcgttgatccgccgaga
acagggcttgatgattcactcatcgccacactgctccggacaaaaccatcccgcatcgtc
tacgtgtcctgtaatccctccacccttgccaaaaacgttaaagatctagtaaaaggaggt
tacacactaaaaagcctccaacccgtggacatgtttccgcagacggcacaggtggagtgc
atttcacagttagttttaaaaaatagttaa
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