Salipaludibacillus sp. LMS25: MM221_17770
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Entry
MM221_17770 CDS
T08296
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MM221_17770 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slms03021
]
MM221_17770 (rpoD)
Transcription machinery [BR:
slms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MM221_17770 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UTR14388
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Position
3799240..3800355
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AA seq
371 aa
AA seq
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MADKPIRPMAEGDLTIDQVKEQLLETGKKRGTLTYAEITERLGAFDQDSDQMDEFFEYLG
EQGVEILNDNENVPSLQQVEKEEEFDLNDLSVPPGIKINDPVRMYLKEIGRVPLLSAAEE
IDLAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDY
DKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPE
EVSKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLK
EQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKRLKDFLE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaccaattcgtcctatggcggaaggtgatttaaccatcgatcaagttaag
gaacaactattagaaacaggtaaaaaacgggggacattaacctacgcagaaattactgaa
agactaggtgcatttgatcaagattcagatcaaatggatgaattttttgaatatctggga
gaacaaggtgttgaaatattaaatgataatgagaatgtcccgagtctccagcaagttgaa
aaagaagaagaatttgatttaaacgacttgagtgtgcctccgggaattaaaataaatgat
ccggtaaggatgtatttaaaagagattggccgagtaccactgttatcagcagcagaagag
attgatttagcaaaacggattgaaaatggagatgaagaagcaaagcgccgattagcggaa
gcgaacttgcgtcttgttgttagcattgctaaacgctatgtggggcgtggtatgctcttc
cttgatttaattcaagaagggaatatgggtctgattaaagcagtagaaaagtttgattac
gataaaggctttaagtttagtacttatgccacctggtggattcgccaagccattacacgt
gctattgctgaccaagcaagaacgatccgtattccagttcatatggtggaaacgatcaat
aagctcattcgtgtgcaacggcagcttttacaagatctcggacgtgaaccaacaccagaa
gaagtctctaaagaaatggaattgacaccggaaaaagtgcgagaaattttgaaaattgct
caagagcctgtttcattggaaacaccaatcggagaagaagacgactctcatttaggggac
tttatagaggatcaagaagctttagcgccatctgatgctgcagcatacgaattgcttaaa
gaacagcttgaagatgtgcttgatacgttaactgatagagaagaaaatgtgctgcgactt
cgttttgggcttgatgatggtcgaacaagaacattggaggaagtaggtaaagtgttcgga
gtgacacgtgagcgtattagacaaatagaagcaaaagcgttaagaaagcttcgtcaccca
agtcgtagtaagcgacttaaagattttcttgaataa
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