Salipaludibacillus sp. LMS25: MM221_20210
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Entry
MM221_20210 CDS
T08296
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
slms
Salipaludibacillus sp. LMS25
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slms03400
]
MM221_20210 (addB)
Enzymes [BR:
slms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM221_20210 (addB)
DNA repair and recombination proteins [BR:
slms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
MM221_20210 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UTR14839
LinkDB
All DBs
Position
complement(4299497..4303003)
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AA seq
1168 aa
AA seq
DB search
MPIHFYLGRSGTGKTTKIQQEILTSSTSDPKGAPIIYLVPEQMTFQAEKNLVPSSGVGMI
RTQVLSFSRLALRVLQEVGGAARIHMDKIGVHMLIRKIVEQHKTEFRLFQKATTNQGFID
KMEQMLIELKRYEIDGSKLNEQLQLWRESEPSSSLERSLYDKLYDIQLVLDKVEKELSST
YLTAEDYLHILAEQIPQSRQLENATIYIDGFHSFTPIELTVVKGLVRQCRNIHIALTLDK
PVQKDTILHPLDLFYETANTYQQLILACDEANITSIHHHLFQESQRFKAAGLKHLEEQGG
RRPVAPSYSHEGIRVISAVNRRGEVEKVAREIKSLVRDHGWRYKQIAILLRNPVDYIDHF
ETVFSDEKIPFFMDQKRSVLNHPLIEFIRSALEVIQKDWRYETVFRMLKTEFLFPLDSSV
REKVDQLENYVLAYGIQGRKWYSGDVWRYRKMATTAEYELDKSDDEVTIEKELNELKNNL
LTPVFSFQERLKKASTVEDYCRIIFNLLEDIKAAEKLEQLRHIAVSEDHLRDAREHDQLW
GTLLSILDQMVEMSGEEDVHFDLFIKMLETGFEAMEFTIIPPAFDQVMIANMETSRLTDI
DCAFIVGANDGVIPAKPDEGSMISEEERENLEKTGMKLAPGAKRQLINENFLMYLAQAIP
SSKLYITYPIADEEGRSMQPSMYLNYVMQAFPNLITEMAFNTPIDVEAKEELSFISHPDR
TLTHLAFQLQQWRKGYNITPIWWDAYNWFVENDQWHDKAARILSSLTYKNKPTRLSKDLA
VKLYGDSLKTSVSRLEQYNACPFSQFANYGLKLKERETFKLEAPDIGTLFHAALKEMAEL
LRREGKDFSTLSKDEAIIKAKTIVEQLAPKIQREILLSSSRFKYIQQKLEEVVATASTIL
AEHAKKTGFSPAGLEVGFGPGQQLPPLTFKLDNGGTVELIGRIDRVDQAKDESGVYVRII
DYKSSSKDIKLDEVYYGLALQMLIYLDVVVSFASQWLGTEVSPAGVLYFHVHNPIIQTDQ
KLSLEQIESKIIKEFKMKGLLSSQPEAIKQMDTSLESGRSDIVPVGFKKDGEVYSDSKVV
TPDDYEHLRTYLRQHVKQIGEAILTGDLAISPYMKNGKIPCQFCSYKALCQFDASLETND
YRWLPPQSKETMIATIREKGGHRYGDIT
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcctattcatttctatttaggccgctctggaacaggtaaaacgacaaagatacaacaa
gaaattttgacttcatccacgagtgatcctaagggagcacccattatttacttagtgccg
gaacaaatgacatttcaagctgaaaaaaatcttgtgccatcttcaggtgttggtatgatt
cgaacccaagtgttgagcttttctcgactggcgctaagagtcttgcaagaagtaggtggc
gctgccagaattcatatggataagatcggtgttcatatgttaatacgaaaaattgttgag
caacataagaccgagtttcgtctatttcaaaaggcgacaactaatcaaggttttatagac
aaaatggagcaaatgctgattgaattgaaacgttacgaaattgatggatcaaagctgaat
gaacaattacagctatggcgtgaatctgagccttcatcatcacttgaacggtcactttat
gataaattatacgacattcaactcgtattagataaagtagaaaaagagctttcctcaaca
tatttaactgccgaagattatttacacatcttagctgaacaaattccgcaatctcgtcaa
ctagaaaatgcaaccatttatattgatggttttcatagttttacaccaattgaattgacg
gttgtaaaggggcttgtgagacaatgtcgtaatatacatatcgccttgactcttgataaa
cctgtacaaaaggataccattcttcacccactcgatttattttacgaaacagctaacaca
tatcaacaacttattcttgcatgtgatgaagctaacataacgtccattcatcatcacctt
tttcaggagagtcaacgatttaaagcagcgggattaaaacacctagaagaacaggggggg
cggcgtcctgtcgcaccatcttactcacatgaaggaattagagtcataagtgctgtaaat
cgacgaggtgaagtggaaaaggtagcgagagaaattaaatcgttagtgcgagatcacggg
tggcggtataaacaaattgccattttacttagaaatccagttgattatatagatcatttt
gagaccgtgttttcggatgagaagattcctttttttatggatcaaaaacgctcagtgctt
aatcatcctctaattgaatttattcgttctgcattagaagtcattcagaaggattggcga
tatgagactgttttccgcatgttaaaaacagagtttttatttccattagactcttcagtt
cgagagaaagttgaccaattagaaaactatgtcttagcatacggcatccaaggaagaaaa
tggtatagtggtgacgtgtggagatataggaagatggctacgaccgcagaatacgagtta
gataaatctgatgatgaagtaactattgaaaaggaattaaacgagttaaaaaataactta
ttaacccctgtgttttcatttcaggagcgtcttaaaaaagcgagtacggtagaagattat
tgtcgaattatttttaatttacttgaagatataaaggcggcagaaaagctcgaacagctt
cgccatatagctgtttcagaagatcatttacgcgatgctcgagaacatgatcaactatgg
ggaacacttttaagtatacttgatcaaatggtagaaatgagcggagaagaagacgttcat
ttcgacttgtttataaaaatgcttgagactggttttgaagcgatggaatttacgattatt
ccgccagcatttgaccaagtaatgattgctaatatggaaacgtctcgactaactgacata
gactgtgcctttatagttggcgcaaatgatggggttataccagcaaagcccgatgaaggg
agtatgatatctgaggaagaacgtgagaacctcgaaaaaacagggatgaagctagcacca
ggtgctaagcgccagttaataaatgagaatttcctcatgtatttagctcaagctatccca
tcatctaagttgtatattacctatccaattgctgatgaagaaggaagaagtatgcagccg
tcaatgtatctcaattacgtgatgcaagcttttccaaatcttataactgaaatggcattt
aacacgccaatagatgttgaagcaaaagaggaattatcgtttatttctcatcctgatcga
acgttaacacatcttgcttttcaattacagcaatggcgtaaaggttacaatataacgccc
atttggtgggatgcgtataattggttcgttgaaaacgaccagtggcatgataaagcagca
cgtattctttcaagcttgacttataagaataagccgacacgtctttcaaaagatttagca
gtcaaactgtatggtgattcgttgaaaacaagtgtgtctagacttgaacaatataatgct
tgcccgttttcacagtttgctaattacggacttaagctgaaggagcgggaaacatttaaa
ttggaagctccggatattgggacattatttcacgcagctcttaaggaaatggcagaattg
ttaaggcgtgaagggaaagatttttccacattatcaaaagatgaagccataattaaagca
aaaacgattgttgaacagctagctccgaaaattcaacgggaaattttactaagctcaagc
cgatttaaatatatccagcaaaagcttgaagaagttgtagcaactgcttcaacgatccta
gctgagcatgcgaaaaaaacaggattttcacctgctggtttagaagtagggtttggtcca
ggtcaacaattacccccattaacatttaaattagacaacggaggtactgttgagcttatc
ggtagaatagacagggttgaccaagctaaagatgaatcaggtgtttacgtacgcatcatt
gattataaatcgagtagtaaagatattaaacttgatgaggtttattacgggttagcctta
caaatgctcatctatttagacgtcgtagtaagctttgcctcccagtggttagggacagaa
gtctcaccggcaggcgttttatattttcatgttcacaacccaattatccaaacagatcaa
aaattatctctagaacaaatagaatcaaaaataataaaagagtttaaaatgaaaggcttg
ttatcatctcaacctgaagcgattaaacaaatggatacatcgttagaaagcggacgttca
gatatagtaccggtcggttttaagaaagatggagaagtgtactcagattccaaagtggtg
acacctgacgattacgaacacttaaggacttatcttagacaacatgtaaagcaaatagga
gaagccattttaacaggtgacttagctatctcgccttatatgaaaaacggaaagattcct
tgccaattctgttcgtataaagcattatgtcagtttgatgcatcgcttgagacaaatgat
tataggtggttaccaccacaatctaaagaaacaatgatcgccacaatacgtgagaaaggg
ggccatcgttatggagatatcacctaa
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