Staphylococcus lugdunensis N920143: SLUG_03490
Help
Entry
SLUG_03490 CDS
T01951
Symbol
slsD
Name
(GenBank) putative LPXTG cell wall-anchored protein (pseudogene)
KO
K14194
serine-aspartate repeat-containing protein C/D/E
Organism
sln
Staphylococcus lugdunensis N920143
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SdrD_B
Big_8
CarboxypepD_reg
SdrG_C_C
SpaA
YSIRK_signal
CarbopepD_reg_2
Collagen
EMC7_beta-sandw
Ig_DR_A0283-like
CFSR
bMG3
Gram_pos_anchor
MetallophosN
NOMO1-like_1st
NOMO1-like_2nd
Y_Y_Y
NusG_II
Motif
Other DBs
NCBI-ProteinID:
CCB52766
LinkDB
All DBs
Position
join(374666..378073,378077..379528)
Genome browser
AA seq
1619 aa
AA seq
DB search
MTNRKRNSSQRMDFIPNKLNKYSIRKFTVGTASILVGATLFLGHHEAEAAEKQQSISQNH
SDEQESSQADTTVTTEQTTNNNVSSQTNATSPSTQDKTTIDHTENPSSTNQQITENQSLH
AKDLQTSNQNNVSHKDTANKSTEKEARQHQNHKSTIQQQESSEKLVTAAQNASATNQAVS
TNTNETHVQYADKKLSQIGVNHQTKEQVKASLVTKKAFKPRSKRDLDNTIVAEALKADIT
NPDYGVRTPATPVTAAASTSPTTRALSSNYRVRALAAATPTGKDVSDKIKFSNIDIAVEG
RTAHTNASGQRELWVTSGDILSLKADYTVDNSVKSGDTFTIGYGQYIRPGGFSLPSSDTE
LRDANGAIIAKGKYDSNTNKTTYTFTNYVDQYDNIQGSFKIAATAKRENAINDKGSYNMD
VKIGNVSFNKNIIVDYGDNKNNPLNASTLYRDPKTNQQYRIIYINEPGKTYKNVKYHSTT
MNGKLIDGTDAIKVYKVNDPSAMVNSFAPDLTSSKVTDVTSSKTITYDNNRSTVNVSLGN
LDGKTRYIIAEKVEPTTDNGNLSSTFSITNDDKNNPTIWAASTTQGSAGDNSTGSGQQTG
KYSLGDIVWNDKNRNGIQDIGEEGIPNVYVTLKDANGNEIDRVTTDENGNYKFKNLKNGE
YTLEYSTPNGGYSLTKADQSNNDAVDSDAQLVNGKYVAKATIQDDDNMTVDAGFYKSVYN
IGDFVWNDTNKNGIQDDGEKGLAGVTVLLKDEQGRTIATTVTDKNGKYGFYELESGNYTV
QFITPDGYILSPSKVGTDVTKDSNGDEVPIKLTENDYSNDLGLYKPDAPKLDDYEITVED
KSYENTVRVNTKLPKNTIQLAQQGKDGRDRVYYKQLGYHPDLTGKDASKLLQIDGYYFEE
VRRDHIYQSQDAIFEYNLDNNTGVKNITYNPTTNTYTVTYQDGSTKELPGQQPKGLTINN
SYINQNGDTIVEFSDGTTITIPKGKDGVDGKKGEDGKTPKIEQTPITDSSGKQIGVTITV
KDGDGKVINTQKVLNGQDGAKGNPGEKGEKGDPGTKGDKGEKGDTGAAGRDGQNGQDGKS
VIANTERGTKDGQEGAYIRIYEVNPDGSRGTMISETFIKDGVKGQDGKDGRSPSIQTPIK
DEKGKIIGTTITILSPDGQEVSHQDILNGKDGQNGTSVTTITERGRQNDQTGSYVRTYER
NPDGSRGKLISETFISDGQNGKDGQNGMNGKSITAETRPGTDADGNTGAWIRVYELNPDG
TKGQLISETFIKNGAKGEKGEDGKTPKIEQTPIRDSSGNQIGVTITVTDGDGNVVSKENI
LNGKDGAKGENGKTPSVEQQAIQDKDGKQIGVTIIIKDGDGKEISRQNILNGQDGKNGTP
GKDGQTPTVETMPALDKDGKQIGVTIITRDGNGKEVSRQNIYNTSNITNIYVNVEGNIVF
VFKDGTTCICKCEPNKPNEPGKPSEPGKPNEPNKPSEPSKPSEPNKPSEPSKPSEPGKPS
EPNKPNEPSKPSEPNKPNEPSKPSEPTKPSEPNKPSEPGKPSKPNKSVHTRTMKHVNYKT
TSHLQQVHDTTQSNNDKKQQELPATGAVDDNGYQAPFFGSLFAISGTILFLARRRKHHQ
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgactaacagaaagagaaactcgtcacaacgcatggattttatcccaaacaaactaaac
aaatattcaatcagaaaatttacagtaggtacagcttcaatattagtaggtgccacactt
ttcttagggcatcatgaagctgaagcagctgaaaaacaacaatccatatctcaaaaccat
agcgatgaacaagaaagttctcaagctgatacaacagtaaccacagaacaaacaacaaat
aataatgtttcttctcaaactaacgccacgtcaccaagcactcaagataaaacaacgata
gatcacactgaaaatccatcttcaacaaaccagcagataacagaaaatcaatcactgcat
gcaaaagatttacaaacatcaaatcaaaacaatgtctcgcataaagatactgcaaacaaa
tcaacagaaaaagaagctagacaacatcaaaatcataaatcgacaattcaacaacaagaa
agttcagaaaagttagtaacagctgctcaaaatgcatcagctacaaaccaagctgtatcc
accaatacgaatgagacacatgtacaatatgctgataaaaaattgagccaaattggcgtg
aaccatcaaacgaaagaacaagttaaagcttcactagttactaagaaagcttttaagcca
cgttctaaacgagatttagataatacaattgtggcagaagccttaaaagcagacattaca
aaccctgactatggtgttagaacccctgcaactcctgtaactgcagctgcttcaacatct
ccaacaacgcgtgcattgagtagtaattatagagtaagagcattagcggcagctacacca
acaggtaaagatgtgagtgacaaaattaaattttcaaatatagatatagcagtggaaggt
agaactgcacatacaaatgctagtggtcaacgtgaattatgggtgacttctggagatatt
ttatctttaaaagcagattataccgttgacaatagcgttaaaagtggagatacatttacg
ataggctatggacaatatattagacctggaggattttcgttaccatcatcggacacagaa
ttaagagatgcaaatggtgcaattatagctaaaggtaaatatgatagtaacacgaataaa
acaacctacacgtttacaaattacgttgaccaatatgataatattcagggatcttttaaa
atagctgcaactgctaaacgagagaatgccatcaatgataaaggatcatataatatggac
gtaaaaattggaaatgtttctttcaataaaaatattattgttgattatggtgataataag
aataaccctttaaatgcatcaacgctttacagagatccaaaaacaaaccaacagtatcga
atcatttatattaatgagccaggcaaaacatataaaaatgtgaaatatcatagtacaaca
atgaatggaaaactcatagatggcacagatgcaataaaagtttataaagtgaatgatcct
tcagcaatggtcaacagtttcgcacccgatttaacttcaagtaaagtaacagatgttaca
tcatcaaaaacaattacatatgataataatcgctcaactgtaaatgtttctttaggaaat
ttagacggtaaaacacgttatattattgctgaaaaagtagaacctacaactgacaatggt
aacttaagttcaacgttttcaataactaacgatgataaaaataatccaacaatttgggca
gcaagtactacacaaggttctgctggagacaattcaactggtagtggtcaacaaacaggt
aaatattcacttggcgacattgtctggaatgacaaaaatcgaaatggcattcaagatata
ggagaagaaggcatacctaacgtttatgttactttaaaagatgctaacggaaatgaaatt
gacagagtgacaacggatgagaacggcaactataagtttaaaaatttaaaaaatggagag
tacactttagaatattcaactcctaatggaggatattcgttaaccaaagcagatcaaagt
aacaatgatgcagtcgactcagatgcacaattagtcaatggaaaatatgttgctaaagct
acaattcaagatgatgacaacatgacagttgatgccggattttataaatctgtttataac
atcggagacttcgtttggaatgatacgaataaaaacggcattcaagatgacggagaaaaa
ggacttgccggcgtaactgtattattgaaagatgaacagggacgtacaattgcaactact
gtaaccgacaaaaatggcaaatatggcttttacgaattagaatctggtaactatacagtt
caatttattacacctgatggttatatattatcaccatcaaaagtaggtacagatgtaact
aaagattctaatggcgatgaagtaccaattaaattaactgaaaatgattattctaatgat
ttaggtttatacaagccggatgcacctaaattagatgactatgaaattacagtagaagat
aaaagttatgaaaatactgttcgtgttaacactaagttacctaagaatacaatccaactt
gcacaacaaggtaaagatggtcgtgatcgtgtatattataaacaattaggctatcatcca
gatttgactgggaaagatgcttcaaaattactgcaaatagacggctattattttgaagaa
gtacgccgagatcatatataccaatcacaagatgctatttttgaatataacttggataat
aacacaggtgttaaaaatataacgtataatccaacaacaaatacgtataccgtgacatat
caagacggttcaacaaaggaactaccaggtcaacagcctaaaggattaacaataaataat
agttatattaatcaaaatggagatactattgtggaatttagtgatggtacaactattacg
attcctaaaggtaaagatggtgtcgacggtaaaaaaggtgaagatggtaaaacacctaaa
attgagcaaacaccaattaccgatagctcaggcaaacaaattggggttacaatcactgtt
aaagatggtgatggtaaagtaataaatacgcaaaaagtacttaatggtcaagatggagca
aaaggaaatccaggtgaaaaaggcgaaaaaggagacccaggaacgaagggtgacaagggc
gaaaaaggagatacaggcgctgcaggtcgagatggtcagaatggtcaagatggtaagtca
gtcattgcaaatacagaacgtggtacaaaagatggtcaagaaggcgcatatattagaatc
tatgaggtcaatccagatggtagtcgcggcacaatgatttctgaaacattcatcaaagat
ggtgtgaaaggccaagatggtaaagatggacgttcaccatcaatccaaacgcctataaaa
gatgaaaagggtaagattatcggaacgacgattactattctaagtccagatggtcaagaa
gtttcacatcaagatattttaaatggtaaagatggccaaaatggaacatctgtgacaacc
attacagaacgtggtagacaaaatgatcaaacaggttcatatgttagaacatatgaaaga
aatccagacggtagtcgtggcaagctcatcagtgaaacctttatctcagatggtcagaat
ggtaaggatggacaaaatggcatgaatggaaaatctataacagcggaaacacgtcctggt
acagatgctgatggaaacactggtgcatggattcgcgtttatgagttgaatcctgatggc
actaaaggccaacttatcagtgagacgtttattaaaaatggcgcaaaaggtgaaaaaggc
gaagacggtaagacaccaaaaatcgaacaaactccaatacgtgacagttctggtaaccaa
attggtgtaacaatcacggtaacagatggtgatgggaacgtcgttagtaaagagaatatt
ttaaatggcaaagacggtgcaaaaggtgaaaatggtaagacgccatctgtagaacaacaa
gccattcaagataaagatggaaagcaaatcggagtcacaattattatcaaagatggagac
ggtaaagaaatcagtcgtcaaaacattctaaatggccaagatggtaaaaatggtactcct
ggtaaggatggtcaaacaccaacagttgaaacaatgccagcattagataaagatggaaag
caaatcggtgtaactattattacacgcgatggtaatggcaaagaagtaagtcgtcaaaac
atatacaatacatctaatatcacaaatatttatgttaacgttgaaggcaacattgtcttt
gtcttcaaagatggaacaacttgtatttgtaaatgtgagccaaacaaaccgaatgagccc
ggcaagccaagcgaaccaggtaaaccaaatgaaccaaacaaaccgagtgagccaagcaag
ccaagcgagccaaacaagccaagtgagccaagcaagccaagcgaaccaggtaagccaagc
gagccaaacaaaccaaatgagccaagcaagccaagcgagccaaacaaaccaaatgagcca
agcaagccaagcgagccaaccaagccaagtgagccaaacaaaccgagcgaaccaggtaag
ccaagcaaaccgaacaaatcagttcatactagaacaatgaaacatgtgaactataaaaca
acgagtcatttacagcaagttcatgatacgacacaatcaaacaatgataaaaaacagcaa
gaattgccagcaacaggtgctgttgatgacaatggttatcaagctccattctttggatca
ttatttgcaatttcaggaacaatattgttcttagcaagacgtcgtaaacatcatcaataa
DBGET
integrated database retrieval system