Staphylococcus lugdunensis N920143: SLUG_09460
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Entry
SLUG_09460 CDS
T01951
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUG_09460 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sln03021
]
SLUG_09460 (rho)
03019 Messenger RNA biogenesis [BR:
sln03019
]
SLUG_09460 (rho)
Transcription machinery [BR:
sln03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SLUG_09460 (rho)
Messenger RNA biogenesis [BR:
sln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLUG_09460 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
S1CSD-TOTE-2
ATPase_2
AAA_24
Mor
Motif
Other DBs
NCBI-ProteinID:
CCB53411
LinkDB
All DBs
Position
997233..998549
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AA seq
438 aa
AA seq
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MPERLRTSPQYESFHELYKNYTTKDLTQKAKDLKLSNYSKLNKKELVLAIMEAQMEKDGN
YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
YYGLLQVDFVNDQNAEEVKKRPHFQALTPLYPEERIILETDSHNYSTRIMDLVTPIGLGQ
RGLIVAPPKAGKTSLLKEIANAISVNKPEAKLFILLVGERPEEVTDIERSVESAEVVNST
FDEPPEHHTKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLAE
RRVFPAIDIGRSSTRKEELLISKSELDSLWQLRNMFTDSTDFTERFIRKLKRSKSNKEFF
EQLQQAAKESTKTGKPII
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaagattaagaacatcaccgcaatatgagtcatttcatgaactctataaaaat
tatacaacgaaagatttaacgcaaaaagcaaaagatttaaagttatctaattacagtaaa
ttaaataaaaaagaattagtattagccattatggaagcccagatggaaaaagatgggaat
tattacatggagggtattttagatgatatccagccagatggttatggttttttaagaaca
gtcaactattcaaaaggggaaaaagatatttacatatctgcgagccaaattcgtcgcttt
gaaattaaacgtggcgacaaggtgactgggaaagttagaaagccaaaagataatgaaaag
tattatggtctattacaagtagatttcgtcaatgatcagaacgccgaagaagtaaaaaaa
cgtcctcacttccaagctttaactccactttatccggaagaacgtatcattttagaaact
gattctcacaactattcaacaagaattatggatttagttacaccaattggccttggtcaa
cgtggacttattgttgcaccacccaaagctggtaaaacatcgttattaaaagaaatagct
aatgcaattagtgtgaataaacctgaagcaaaattatttattttacttgtaggtgaacgt
cctgaagaagtcactgacattgaacgatcagtggaatctgctgaagtagtaaactcgacg
tttgacgaacctccagaacaccatactaaagttgctgaacttttattagaacgtgctaag
cgtttagttgagataggggaagatgttatcattctcatggattccattacacgtctagca
agagcatacaacttagttatacctcctagtggccgtactttatctggtggattagaccca
gcttcgttgcataagccaaaagctttctttggtgctgcacgtaatatagaagctggtggc
agtttaaccattttagcgacagctttagtagatacgggatcacgaatggacgatatgatt
tacgaagagtttaaaggtactggtaatatggaacttcacttagacagaaaattagcagaa
cgtcgtgtattccctgctattgatattggacgaagctcaacacgtaaagaagaattgctt
attagtaaatcagagttggattcattatggcaattgcgcaatatgtttacagattcaact
gattttactgagcgatttattcgtaagttaaaacgttctaaatcaaacaaagaatttttt
gagcaattacagcaagctgcaaaagaaagtactaaaacaggaaaaccaattatttaa
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