Staphylococcus lugdunensis N920143: SLUG_09840
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Entry
SLUG_09840 CDS
T01951
Name
(GenBank) putative helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUG_09840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sln03019
]
SLUG_09840
03009 Ribosome biogenesis [BR:
sln03009
]
SLUG_09840
Enzymes [BR:
sln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SLUG_09840
Messenger RNA biogenesis [BR:
sln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SLUG_09840
Ribosome biogenesis [BR:
sln03009
]
Prokaryotic type
rRNA helicases
SLUG_09840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Flavi_DEAD
AAA_19
Cas3-like_C_2
INTS5_N
Motif
Other DBs
NCBI-ProteinID:
CCB53451
LinkDB
All DBs
Position
1030175..1031689
Genome browser
AA seq
504 aa
AA seq
DB search
MQNFKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPL
IEKVVNKSGVQSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEEVNS
RRMTALRPPHRKEVLKAREDDIKEKVQNWMSKDNEPRLQRISSELLKEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRQSKNGGNHRRSNKKRGGKFETRNKRTKGNYNKKKSN
NFDRKDKSSKNRTTKGRTFADMQK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagacttagggatttctgaaaaaacagttcaaaccctagaaaatatg
gggtttaaagaacctacgccaattcaaaaagacagtatcccttatgcattagaaggaaga
gacatcctcggacaagcacagacaggtacaggtaaaactggtgctttcggtattcctcta
atagaaaaagttgtaaataaatcaggagtacaatcactgattttagcacctacacgtgaa
ctagcgatgcaagtagcagaacaattaagagagtttagccgtggacaaaatgttcaggtt
gttacggtatttggaggtatgccaattgaccgtcaaatcaaggcgcttaaaaaaggacct
caaattgttgtaggaacacctggacgagttattgatcatttaaatcgtagaacattgaaa
acgaatggcattcacacattgatattagatgaagctgatgaaatgatgaatatgggcttt
atcgatgacatgagattcattatggataagataccggcagagcaaagacaaacgatgcta
ttctctgctacaatgccaaaagcgattcaagcactcgtgcaacaatttatgaaaacacct
caaattgttaagactatgaacaatgaaatgtcagatcctcaaattgacgagtattataca
attgttaaagaattagaaaaatttgatacttttactaatttcttagacgttcatcaacca
gaacttgccattgtatttggtcgaacaaagcgccgtgttgatgaattaacaagtgcttta
ttatcaaaaggttataaagcagaaggattgcatggagacataacacaagccaaacgtcta
gaagtattaaaaaaattcaaaaatgatcaaattgatattttagttgctacagatgtagca
gcgcgtggtttagatatttcaggggtaagtcacgtttataactttgatatccctcaagat
acagaaagttatacacaccgcattggtcgtactggccgtgctggtaaagaaggtatagct
gttacctttgtcaatccaattgagatggattatattcgtcaaattgaagaagttaatagt
agaagaatgactgctttgagaccaccgcatcgtaaagaagttttaaaagcgcgtgaggat
gacattaaagaaaaagttcaaaactggatgtcaaaagataatgaaccaagattacaacgt
atttcaagcgaattgttaaaagaatacgattcaacagaattagttgcgtcattacttcaa
gaattagttgaggcaaatgatgaagtagaagttcaattaacattcgaaaaacctttagca
cgtaaaaatcgccaaagcaagaacggtggaaaccacagaagaagtaacaaaaaacgtggt
gggaaatttgaaacacgtaataaacgtacaaaaggtaattataataagaaaaagtcaaat
aatttcgatcgtaaagataaatcaagcaagaatcgtacaacaaaaggacgtacatttgct
gacatgcaaaaataa
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