Staphylococcus lugdunensis N920143: SLUG_12820
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Entry
SLUG_12820 CDS
T01951
Name
(GenBank) putative single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03410
Base excision repair
sln03430
Mismatch repair
sln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SLUG_12820
03430 Mismatch repair
SLUG_12820
03440 Homologous recombination
SLUG_12820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sln03400
]
SLUG_12820
DNA repair and recombination proteins [BR:
sln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SLUG_12820
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SLUG_12820
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLUG_12820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CCB53762
LinkDB
All DBs
Position
1354530..1356806
Genome browser
AA seq
758 aa
AA seq
DB search
MIKSKYTWNHNEPTQYIDEQIAKKYKLSPIIKKVLESKHIVNEKDIEGLLNGQQQLHEPW
LLSDMTKAIERINLAIDKHERILIYGDYDADGVTSTTIMVKTLQSLGAEVGWYIPNRFSE
GYGPNELAFKNAYDEGVSLIITVDNGIQGYREIEMIQELGVDVIVTDHHEMGSTLPDAFA
IVHPMHPEFDYPCPNLCGAGVAYKVSQALLKNNVPPYYIALASIGTIADLVSLTDENRTI
VKTGLSILNDYQPIQIAALLNEANYNDPIDEETIGFIIGPRLNAVGRLEDASLAAELLMT
EDAEEAAFLAEQVNHFNNERKDIVSKITEEALLLAKEEVAKGRQFLLLAKENWHEGVLGI
VASRIVETYGLPTLILNIDDEQHYAKGSARSIEQVSMFEILSDHQNLISKFGGHHMAAGM
TMPIENISELREGLNAWMANLAQTTSFDQKKQIDVKITEDEITVNNIYDIERLKPFGIDF
NKPLFELDDVNVNSLKAIGKDKNHLKMTIGNSNLATLYWNSGSLVDELELNQPINMIGQL
QINEWNGNQSPQFIIQDIAINQQQILDYRSKRKQLSIDFHDEQLAILIHPQKEKLDHNYY
HYGETIDEHVNRVVLRDLPLSLAHLSESMNGHQFSQIYVVLQHQHSIYFEGMPDKKTFKA
CFKILMSKQKVNLVNDGMALSKFLGIQPNTLKFMLKVFLELGFIIDSNGIISVNQNPNKQ
DIEASQVYQTRKARIEVEKLMLYDDFQHLKHWIIEQMG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcaaaatatacttggaatcacaatgaaccaactcaatatatagatgaacaa
atagcaaagaaatataaactttctccaattataaaaaaagtgttagaaagtaaacatatc
gtaaatgaaaaagatattgaaggattattgaatgggcaacaacaattgcatgagccatgg
ctattaagtgatatgaccaaagccatagaacgcattaatttggcaattgataaacacgag
cgcattttaatctatggtgattatgacgcagatggtgtgacatcaacaacgattatggta
aaaacgcttcaatctttaggagcagaagtaggttggtatattccaaatcgtttttctgaa
ggttacggtccgaatgagttagcgtttaaaaatgcttatgatgaaggtgtttcacttatc
attacagttgataatggtattcaaggatatcgtgaaattgaaatgattcaagaattaggc
gtagatgttattgttacagatcatcacgaaatgggaagcactttaccagatgcttttgcg
attgttcaccctatgcacccagaattcgactatccatgtccgaacctttgtggtgcaggg
gtcgcttataaggtttcgcaagcgctactaaaaaataatgtaccgccatattatattgct
cttgcttcaataggaaccattgccgatttagtatcgttaacagatgagaatagaaccatt
gtaaaaacggggttatctatattaaatgattatcagcctattcaaattgcagcactatta
aatgaagcaaactataacgatcccattgatgaagaaacaattggctttatcatcggcccg
agattaaatgctgttggacgattagaagacgcatcattagctgctgaattacttatgaca
gaagatgctgaagaagcagcatttttagcagaacaagttaatcattttaataacgaacga
aaagatattgtatcaaaaattacagaagaggctttgttacttgccaaagaagaagtggct
aaagggcgtcaatttctgctgttagcaaaagaaaattggcacgaaggtgtgttgggaatt
gtagcgtctagaattgtagaaacatatggattgccaacgctcattcttaatattgatgat
gaacaacattatgcaaaaggatcagctcgtagcattgaacaagtttcaatgtttgaaatc
ttaagtgaccatcaaaatttaatatctaaatttggtggccatcatatggctgctgggatg
acaatgcctatcgaaaacatatctgaattgcgagaaggcctaaatgcatggatggcaaat
ttggctcagacgacatcgtttgatcagaaaaaacaaatagatgtgaaaattacagaagac
gagattaccgttaataacatttacgatatagagcgattaaaaccatttggaatcgacttt
aataaaccattatttgaattagatgatgtcaatgttaattcattgaaagcgattggaaaa
gataagaatcatttaaaaatgacaattggtaactctaatttggctacactttattggaat
agcggaagtttagtcgatgagttagagctgaaccaaccaattaacatgataggtcagtta
caaatcaatgaatggaatggcaatcaatcaccacaatttatcattcaggatattgctatc
aatcaacagcaaattttggattatagaagtaaacggaaacagctatcaatcgattttcat
gacgagcaattagccatattaattcatccacaaaaagaaaaattagatcataattattat
cattatggcgaaactattgatgaacatgtaaatcgtgtcgtattacgtgatttacccctt
tcattagcacatttatcagaaagtatgaatggtcatcaattttctcaaatatatgttgtt
ttacaacatcaacattcaatttatttcgaaggtatgcctgataaaaaaacattcaaagct
tgctttaaaatactgatgtcaaaacaaaaagtaaatttagtcaacgatgggatggcatta
tcgaaatttttggggattcagcctaatacattaaaatttatgttaaaagtttttcttgaa
ctgggctttattatagatagcaatggtataatatcagtaaatcaaaatcctaataaacag
gatatagaagcaagtcaagtttatcaaacgagaaaagcaagaatagaagttgaaaaatta
atgctgtatgatgattttcagcatttgaaacattggattatcgagcaaatgggttaa
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