Staphylococcus lugdunensis N920143: SLUG_14230
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Entry
SLUG_14230 CDS
T01951
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUG_14230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sln03019
]
SLUG_14230
03400 DNA repair and recombination proteins [BR:
sln03400
]
SLUG_14230
Enzymes [BR:
sln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLUG_14230
Messenger RNA biogenesis [BR:
sln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SLUG_14230
DNA repair and recombination proteins [BR:
sln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SLUG_14230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
CCB53906
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All DBs
Position
1490340..1491719
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AA seq
459 aa
AA seq
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MLEDKLKSWFGFDNFKAGQKEIIKSVLDSNHTLGILPTGSGKSLCYQMATYELQQSTLII
SPLISLMDDQVAQLKMSGEQSVAYIHSGMDDNEKNWNMKRLAKSRFIFLSPEFILQPQNF
KLISTIDFGLIVLDEAHCISEWGYDFRPHYALISKITNYYKNATILALTATAPPHLEQDL
NQLLNVSFHVIKTHMNRPNISFQHINFRNDQEKMNWLMHYIEQSGPTIIYVSSKKMCVEL
AKTIYKHGYLTGIYHGDLSYQERQTVQQQFINNDIPVIVATSAFGMGVNKKDIRTVIHFH
LSTSPSSYLQEIGRAGRDQQPSQAISLFQPDDRYLLETILFADMILPYDIDCYELGANIE
PLKQDILEILHSHFTYAQLKQIFQIAQERKQLALNRMLSYSQLDQCRRKYLLEFFGEVPD
IPSICCDHDTDIKPLKIYNRKKVKRQMSYEDKLKNLFLS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgctagaggataaattaaaatcctggtttggttttgataactttaaagcaggacaaaag
gaaattattaaaagtgtattagattcaaatcatacattgggcattttaccgactggtagc
ggtaaaagtctatgttatcaaatggctacttatgaattacagcaatcaactttaattatt
tccccgcttatttctttgatggacgatcaggttgcacaattaaaaatgagtggagaacag
tctgttgcatacattcattcaggtatggatgataatgaaaaaaactggaatatgaaacgc
ttagcgaagagtcgctttatatttttaagtcctgaatttatattacaacctcaaaacttc
aaactaatttcaactatcgattttggtcttattgtactagatgaagcacattgtatctct
gaatggggatatgacttcagaccacattatgcgcttattagtaaaataaccaactattat
aaaaatgctaccatccttgcgctaactgctactgctccgccacatttggaacaggattta
aatcagctgttaaatgtgtcatttcatgttatcaaaacacatatgaatagacctaatatt
agttttcagcacattaactttagaaatgatcaagaaaaaatgaattggttaatgcactat
atagaacaatctggtccaacaattatttatgtttcgtctaaaaaaatgtgtgttgaatta
gccaagactatatataaacatgggtatttaacagggatataccatggtgatttatcttat
caagaacgacaaaccgtccaacaacaatttatcaataatgatataccagtcattgtagca
actagtgcatttggtatgggagtcaataaaaaggatattcgcacggttattcattttcat
ctatctaccagtccgtctagttatctacaagaaataggaagagccgggcgtgatcagcaa
ccgagccaagcaattagcctatttcaaccggatgatcgctatttattagaaaccatcctt
tttgcagatatgattttaccttatgatattgactgctacgaacttggtgcaaacattgag
ccattgaagcaagatatattagaaatcttacattctcatttcacttatgcacaacttaaa
cagattttccaaatagcacaagagagaaaacaactcgcacttaatcgtatgcttagttat
agccaacttgatcaatgtcgtcgaaaatacttattagaattttttggagaagttcctgat
attccatctatatgttgtgaccatgatactgatataaaaccgcttaaaatttataatcga
aaaaaggtcaaacgtcaaatgtcttatgaagataaacttaaaaatttatttcttagctaa
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