Staphylococcus lugdunensis N920143: SLUG_19770
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Entry
SLUG_19770 CDS
T01951
Symbol
csdB
Name
(GenBank) putative selenocysteine lyase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln00450
Selenocompound metabolism
sln01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
SLUG_19770 (csdB)
Enzymes [BR:
sln01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
SLUG_19770 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
SLUG_19770 (csdB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Cys_Met_Meta_PP
Aminotran_1_2
DegT_DnrJ_EryC1
Beta_elim_lyase
SelA
Pyridoxal_deC
Hint
Motif
Other DBs
NCBI-ProteinID:
CCB54496
LinkDB
All DBs
Position
complement(2097890..2099131)
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AA seq
413 aa
AA seq
DB search
MADTTLNVEDVIKDFPILQQQVNGKRLAYLDSTATSQKPIQVLNVLDDYYKRYNSNVHRG
VHTLGSLATDGYESARETVRRFINAHYFEEVVFTRGTTASINMIAHSYGDAHVEAGDEIV
VTEMEHHANIVPWQQLAKRKQATLKFIPMTAEGELRVEDIKATITDKTKIVAITHVSNVL
GTINDVKMIAKIAHEHGAIISVDGAQSAPHMPIDVQDLDCDFFSFSGHKMLGPTGIGVLY
GKRDLLNDMEPVEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYIENIG
FEAIHRHERALTEYAYEQMSTIEGIDIYGPPKDRRAGVITFNLKDVHPHDVATAVDTEGV
AVRAGHHCAQPLMSWLNVSSTARASFYIYNTQQDVDQLVNALKQTKEFFSYEF
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacaactttaaatgttgaagacgttataaaagattttccgattttacaacag
caagtgaatggcaaacgcttagcttatttagattctacagcaacaagtcaaaagcctata
caagtactcaatgtattagatgactattacaagcgctataattcaaacgttcaccgtggc
gtgcatacattaggttcattagccactgatggttatgaaagtgcacgcgaaaccgtgcgc
cgttttataaatgcgcactattttgaagaggttgtctttacacgtggtacaacggcatct
atcaacatgattgcacacagttacggcgacgcacatgttgaagctggtgatgaaattgta
gtaactgaaatggaacatcatgccaacattgtgccatggcaacaattggctaaacgtaaa
caagcgacacttaaatttattccgatgaccgcagaaggcgaattacgtgtagaagatatt
aaagcgacaattaccgataaaactaaaattgtagcgattacacatgtatccaatgtgtta
ggaacaattaatgatgtgaaaatgattgctaaaattgcgcatgaacacggtgcgataata
agcgttgatggtgcacaatcagcaccgcatatgccaattgatgttcaagatttagactgt
gatttctttagctttagtggtcacaaaatgctagggccaacaggcattggtgtgttatat
ggtaaacgtgacttattaaatgacatggagccggtagaatttggcggcgatatgattgat
tttgtcagcaagtatgatgcgacatgggcagacttaccgacaaaatttgaagcaggtaca
ccgctcattgcccaagcaataggccttgcagaagccattcgctacattgaaaatattggc
tttgaagcgatccatcggcatgagagagcgttgactgaatatgcatatgagcaaatgtca
acgattgaaggtattgacatatatggtccgcctaaagatcgtcgtgcaggtgttattacg
tttaacttaaaagacgtacatccacatgatgtagcgacagcagttgatacagaaggtgtt
gctgttcgtgcaggccatcattgtgcacaacccttgatgtcatggttaaacgtatcttct
acagcacgtgcaagcttttatatttataatacgcaacaagatgtcgatcaattagtcaac
gcattgaaacaaacgaaggagtttttctcgtatgaattttaa
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