Staphylococcus lugdunensis N920143: SLUG_20190
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Entry
SLUG_20190 CDS
T01951
Symbol
rnr
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUG_20190 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sln03019
]
SLUG_20190 (rnr)
03016 Transfer RNA biogenesis [BR:
sln03016
]
SLUG_20190 (rnr)
Enzymes [BR:
sln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SLUG_20190 (rnr)
Messenger RNA biogenesis [BR:
sln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLUG_20190 (rnr)
Transfer RNA biogenesis [BR:
sln03016
]
Prokaryotic type
tRNA degradation factors
SLUG_20190 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
CSD
Rho_RNA_bind
S1_RRP5
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
CCB54539
LinkDB
All DBs
Position
complement(2131550..2133925)
Genome browser
AA seq
791 aa
AA seq
DB search
MNLKQSIEAIVKQPDYEPMSVSDFQDALGLNSADSFRDLIKVLVELEQSGLVERTKTDRY
QRKQGKSLGSKLIKGTLSQNKKGFGFLRPENDDMEDIFIPPTKINRALDGDTVIVEVKQS
KGDHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAIDG
HKVLVQITKYADGHDNPEGQVSAILGHKNDPGVDILSIIYQHGIEIEFPDAVLKEAEAVP
DEISPSEIEGRTDLRDELTITIDGVDAKDLDDAISVKALKNGNTELTVSIADVSYYVTED
SQLDKEAYDRGTSVYLVDRVIPMIPHRLSNGICSLNPDVDRLTLSCRMEINARGEVVNHD
IFDSVIHSDYRMTYDAVNQIITEKDPEVRQQYEALTPMLDLAQDLSQRLIQMRRRRGEID
FDISEAKVLVNSEGIPTDVVTRQRGDGERLIESFMLAANETVAEHFSNLDVPFIYRVHEQ
PKSERLRQFFDFITNFGIMIKGTGEDIHPATLQSIQAEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEHSMDSKTQHYWAEKLPEIA
EHTSQRERRAIDAERDTDELKKAEYMIQHIGDQFEGIISSVANFGMFVELPNTIEGMVHI
SNMTDDYYHFEERQMALIGERLAKVFRIGDTVKVKVSHVDVDERMIDFQIVGMPISQSSS
QRPARGKTIQAKTRGKALDKSKNDGQRRKKSKKLKQRKGKNARKKEKNGQTNHKPFYKDK
SVKKKSRRKKK
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatccattgaagcaatcgttaagcaaccagattacgaaccgatgtct
gtgtcagatttccaagatgctttaggtcttaatagtgccgactcatttagagatttaata
aaggtgcttgttgaactagaacaatcggggttagttgaacgtacaaaaacagatagatat
cagcgaaaacaaggaaagtcattaggctcaaaattgattaaaggaacattgagtcaaaac
aaaaaaggatttggctttcttcgacctgaaaatgatgatatggaagatatttttattcca
ccgacaaaaataaacagagccttagatggtgatacagtgattgttgaagtaaaacaatct
aaaggtgaccataaagggaaaattgaaggtgaagtgaaatccattgaaaagcattcggtc
acacaagttgtgggaacatatagtgaagctagacattttggttttgtcattcctgatgac
aaacgaattatgcaagatatttttataccaaaagggcaaagtctaggtgctatagatggt
cataaagtactcgtacaaattactaagtatgcggatggacatgataatccagagggacaa
gtatccgctatacttggtcataaaaatgatccaggcgttgatatcttgtctattatttat
caacatggcatagaaattgaatttccagatgcagtcttgaaagaagcagaagctgttcca
gatgagatttctccatctgaaattgaaggtcgtacagatttacgtgatgaattaacgatt
acgattgatggtgtagatgcaaaagatcttgacgatgccattagtgttaaagcattaaaa
aatggaaacaccgaacttaccgttagcattgcagatgtcagctactacgttactgaagat
tctcagctagataaggaagcttacgatcgtgggacaagtgtctatttagttgaccgcgtc
atacctatgattccacaccgtttaagtaacggtatttgttcattaaatccagacgttgac
cgattgacattaagctgccgtatggaaattaatgcacgtggtgaagtcgttaatcatgac
atctttgatagtgtgatacattcagactatcgcatgacatatgatgctgtaaatcagatt
attactgaaaaagacccagaagtccgtcaacaatatgaagccctcacacctatgctcgat
ttagcgcaagacttatcacaacgcttgattcaaatgcgtcgtcgtcgaggagaaatcgac
tttgacatcagcgaagcgaaagtattagtgaatagtgaaggcattccaacagatgtcgtc
acacgacaacgcggtgatggtgaacggctaatagaatcgtttatgttggcagccaatgaa
accgtagcagagcattttagtaacttagacgtaccatttatctatcgtgtacacgaacag
ccaaaatccgaaagactaagacagttttttgactttataacgaactttggcataatgata
aaaggtacaggtgaagatattcatccagctacactacaatctatccaagcagaagtagaa
ggacgaccagaacaaatggtcatctcaacaatgatgttacgttcaatgcaacaagcgcat
tacgacgatgtaaaccttggacactttggcttatcggcagaatattatacacactttact
tcaccaatacgtcggtatccagatttaaccgtccatcgcttgattcgcaaatatttaatt
gagcatagcatggacagtaagacacaacactattgggcagaaaaattaccagaaattgct
gaacacacatctcaacgtgagcgtcgtgcgatagatgcagaacgtgataccgatgagctt
aaaaaagcagagtatatgattcaacatattggtgatcaattcgaaggtattattagttct
gtagccaactttggcatgtttgtcgaattaccaaatacaattgaaggcatggtccatatt
tccaatatgacagacgattattatcattttgaagaacgtcaaatggcattgattggtgag
cgcttagcaaaagtatttagaattggagataccgtcaaagttaaagtgtcccacgtagat
gtagacgaacgcatgatagacttccaaattgtcggtatgccaatatctcaaagtagtagt
caacgtccagcgagaggtaaaaccattcaagctaaaacacgcggcaaagctttagataaa
tcaaaaaacgatgggcaacgtcgcaaaaaatctaagaagttaaaacagcgcaaaggtaaa
aatgcacgcaaaaaagaaaaaaatggtcaaacaaatcacaaaccattttacaaagataaa
agtgtgaagaaaaagtcacgaagaaagaaaaaataa
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