Staphylococcus lugdunensis N920143: SLUG_22640
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Entry
SLUG_22640 CDS
T01951
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain protein
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sln
Staphylococcus lugdunensis N920143
Pathway
sln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SLUG_22640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sln03021
]
SLUG_22640 (rpoC)
03400 DNA repair and recombination proteins [BR:
sln03400
]
SLUG_22640 (rpoC)
Enzymes [BR:
sln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SLUG_22640 (rpoC)
Transcription machinery [BR:
sln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SLUG_22640 (rpoC)
DNA repair and recombination proteins [BR:
sln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SLUG_22640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCB54788
LinkDB
All DBs
Position
complement(2389577..2393200)
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIKDLLH
EIDLDEELKQLRDELESATGQRLTRAIKRLEVVESFRNSGNKPEWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAINTGAIFNDTNEVLKAYANGYVHLHTRIGVH
AGSFNNPTFTEEQNKKILATSVGKVIFNEIIPESFAYINEPSQANLEDKTPDKYFVDPSQ
LGEGGLKAFFEEQELTEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVADIVVLPDKKDILDEHEKLVDRVTKQFNRGLITEDERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIREGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRLKVEVGQ
SVERGEVLTEGSIEPKNFLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHHFTDANRDAFKQRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSSVKYDKTTVPVAEQT
EEQLTDK
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaatcggtttagcctcacctgaaaaaatt
cgttcatggtcatatggtgaagtgaaaaaaccagaaacaattaattatcgtacgttaaaa
ccagaaaaagatggcttattctgtgagagaatattcggcccaactaaagattgggaatgt
agttgtggtaaatacaaacgtgtgcgttataaaggcatggtttgtgatagatgtggtgtt
gaagtcactaaatctaaagttcgtcgtgaaagaatgggacatattgaattagcagctcct
gtatctcatatttggtacttcaaaggtatcccaagtcgtatgggtctgttattagacatg
tctcctagagcattagaagaagttatctatttcgcttcatatgttgtcgtcgatccaggt
ccaactggtttagaaaagaaaactttattatctgaagctgaatttagagactactatgac
aaatatccaggacaattcgttgctaaaatgggtgcagaaggcattaaagatttattacat
gaaattgaccttgatgaagagcttaagcaattacgtgatgaattagaatcagcaactggt
caaagattgacacgtgcaattaaacgtttagaagttgttgaatcttttagaaattctggc
aataaacctgagtggatgattttagatgtacttccaattattccaccagaaatccgtcct
atggttcaattagacgggggccgttttgctacaagtgacttaaatgacttatatcgtcgt
gtcattaatcgtaataatcgtttaaaacgtttattagatttaggtgcgcctggtattatc
gtgcaaaatgaaaaacgtatgttgcaagaagcagtagatgctttaattgataatggacga
cgcggacgcccagttactggaccaggtaacagacctttgaaatctctttctcatatgttg
aaaggtaaacaaggtcgtttccgtcaaaacttactcggtaaacgtgttgactattcagga
cgttcagttatcgcagtaggtccaagcttgaaaatgtaccaatgtggtttgccaaaagaa
atggcgctcgaattgttcaaaccttttgttatgaaagagttagtacaacgtgaaattgcc
acaaacattaaaaatgcgaaaagtaaaattgaacgcatggatgatgaagtttgggatgta
ttagaagatgttattagagaacatccggttctgttaaaccgtgcgcctacgcttcataga
ctaggtattcaagcatttgaaccaacattagtagaaggtcgcgcaattcgacttcaccca
cttgtaacaacagcttacaatgcggactttgatggtgaccaaatggctgttcacgtacca
ttatctaaagaagctcaagcagaagcacgtatgcttatgctggctgcacaaaatattttg
aaccctaaagatggtaaaccagttgttacgccatcacaagatatggtattaggtaactac
taccttactttagagcgcaaagatgcaattaatactggtgctatttttaacgatacaaac
gaagtgttaaaagcatatgccaatggctatgtacacttgcatacacgtatcggtgtacat
gctgggtcatttaacaacccgacatttactgaagaacaaaataaaaaaatcttagctaca
tctgtaggtaaagtcatttttaatgaaattattccagaatcatttgcgtatattaatgaa
ccatcacaagcaaatttagaagacaaaacacctgataaatattttgttgatccatcacaa
ttaggtgaaggtggacttaaagcattctttgaagaacaagaattgactgagccattcaac
aaaaaattcttaggtaatattattgctgaagtctttaatagatttagcattactgataca
tcaatgatgcttgaccgtatgaaagacttaggtttcaaattttcatcaaaagcaggtatt
actgtaggtgtcgcagatatcgttgtattaccagacaaaaaagatatcttagatgaacat
gaaaaacttgttgatcgagtaacaaaacaattcaatcgtggtttaataacagaagatgaa
cgttataatgcagtcgttgaaatttggacagatgctaaagaccaaattcaaggcgaatta
atgcaatcacttgagaaaacaaacccaatctttatgatgagtgattcaggtgcgcgtggt
aacgcatctaactttacgcaattagctggtatgcgtggtttaatggctgcgccatcaggt
aaaattattgagttgccaatcacttcttcattccgtgaaggtttaaccgtattagaatac
ttcatttctacccatggtgcacgtaaaggtcttgccgatacagcgcttaaaacagctgac
tctggttaccttactcgtcgtcttgttgacgttgcacaagatgttattgtacgtgaagaa
gactgtggcactgaccgtggtttacttgtatctgatattagagaaggtacagaaatgatt
gaaccgtttatcgaacgtatcgaaggtcgctattctaaagaaacaattcgtcaccctgaa
acggatgaaattatcattcgtcctgatgaattgattacagctgaaatcgcgaagaaaatt
accgatgcaggtattgagcaaatgtacatccgttcagcatttacttgtaacacacgtcac
ggcgtatgtgaaaaatgttatggtaaaaaccttgcgacaggtgaaaaagttgaagtgggt
gaagcagttggaacaattgctgctcaatcaattggtgaaccaggtacgcagcttacaatg
cgtacattccacacaggtggtgtagcaggtagcgatatcactcaaggtcttccacgtatc
caagagattttcgaagcgcgtaatccaaaaggacaagctgtgattactgaaatcgaaggt
gttgttgaagatattaaattagcgaaagaccgtcaacaagaaattgttgttaaaggcgca
aacgaaacaagatcttaccttgcttcaggtacttcaagattaaaagtagaagtaggacaa
tcagttgaacgaggagaagtattaacagaaggttcaattgagccgaaaaacttcttagct
gtggctggtttaaatgctactgaaagttacttgcttaaagaggtacaaaaagtttatcgt
atgcaaggtgtagaaatcgatgataaacacgttgaagtaatggttagacaaatgctacgt
aaagtgcgtattatcgaagctggcgacactaaattattaccaggttcacttgtagatatt
caccactttacagacgcaaaccgcgatgcatttaaacaacgtaaacgcccagcaacagcc
aaaccagtgttgttaggtattactaaagcatctcttgaaacagaaagcttcttatcagcg
gcttcattccaagaaacaacacgtgtccttacagatgcagctatcaaaggtaaacgtgat
gacttacttggacttaaagagaatgttattattggtaaacttatcccagctggtacaggt
atgagacgatacagtagcgttaaatacgataaaaccactgttccagtagctgaacaaaca
gaagaacaattaacagacaaataa
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