Shewanella loihica: Shew_0004
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Entry
Shew_0004 CDS
T00489
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_0004
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_0004
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Shew_0004
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Topoisomerases
Shew_0004
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Shew_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ABO21877
UniProt:
A3Q8S9
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All DBs
Position
3783..6200
Genome browser
AA seq
805 aa
AA seq
DB search
MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDV
IITIHADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATNTGTEIRFWPSAETFSDT
LFHFDILAKRVRELSFLNSGVGIRLIDERDNKDEFFKYEGGISAFVDYLNLNKTPVNKEI
FHFVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRNLNSYMDK
EGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGD
YLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSE
IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQPPLYKVKK
GKQEQYLKDDPALTEYLTNLALDGGEIHPSQDAPAMSGAPLEKLVYQYREVEAIFDRLEQ
RFPIMLTERMLYQPGLSNDILADEAKVKQWCDNYVAALTEAESGGFIFSAEAFLDPERQV
YLPKVTVRKHGIDTHYLFSYDFLQSSDYQRMTALAEALEGLIEEGGYVKRGERMKEISSF
VDALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIAADQLFTC
LMGDQVEPRRDFIESNALNVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaatagttacgattcttcgagtattaaggtactaaagggccttgatgcggta
cggaagagacctgggatgtatattggtgacaccgacgacggtacgggtctgcatcacatg
gtgttcgaagtggtcgataactctatcgatgaggcgttagcgggttactgtaatgacgtg
atcattactatccatgccgacggttcggtatcggtaaaggatgacggacgtggtattcct
gttgctatccacccagaagagggggtatcggcggctcaggttattatgacggtactgcac
gccggcggtaagttcgacgataactcttataaagtatctggtggtctgcacggcgtgggt
gtttctgtggttaacgccctgtctgagaagcttaagctgaccattcgccgtgacggcaaa
ctgtatgaacagttctacaccatgggtgagcccgatgcgcctatcgccgagataggcgat
gccaccaacacaggtactgagatccgtttctggccaagcgccgagactttctcggacact
cttttccatttcgatattctggctaagcgtgttcgcgagctgtcattccttaactcgggc
gtaggtattcgcctaatcgacgagcgcgacaacaaggatgagtttttcaagtatgaaggc
ggtattagtgcattcgtcgattacctcaaccttaacaagaccccggtcaacaaagagatc
ttccacttcgtgcaggagcgtgaagacggtatcacagtagaagtggcgatgcagtggaac
gatggtttccaggaaaacatcttctgtttcaccaacaacattcctcagcgcgatggtggt
actcaccttgctggtttccgtgctgccttaacccgtaacctcaacagttacatggacaag
gaaggctttaacaagaaaggcaagacctctgctaccggcgatgatgcccgtgaaggcctg
accgccgtgatctcggttaaggtgccggatcctaagttcagctctcagaccaaagacaag
ctggtatcgagcgaagtgaagtcggccgttgagcagaccatgggcgagaagttgggtgac
tacctgctggagaatcctaacgaagccaagcttatcgttggtaagatcatcgatgcggcc
cgtgcccgtgaagcggcgcgtaaggcccgtgagatgacccgtcgtaaaggcgcattagat
ttaggtggtctgccaggtaagttggcggattgccaggagaaagacccagcgctttctgaa
atttacatagtggagggtgactctgcgggtggtagtgccaagcagggtcgtaaccgtaag
aaccaggctattctgccgcttaagggtaagatccttaacgttgagaaggcccgtttcgac
aagatgctctcttcacaggaagtagcgaccctgatcaccgccctgggctgtggtatcggc
cgcgacgagtatgatcccgataagacccgttatcacaacattgtcatcatgacagatgct
gacgtcgacggctcgcacattcgtaccttgctgttgaccttcttcttccgtcaaatgcca
gagcttatcgagcgtggctatgtatttatcgcccagccgccactgtacaaggtgaagaag
ggtaagcaggagcagtacctgaaagatgatccggcgctgaccgaatacctgactaacctg
gccctggacggtggtgagatccatccgtctcaagacgcaccggccatgtctggcgcgccg
ctagagaaattggtgtaccagtaccgtgaagtggaagcgattttcgatcgtctcgagcag
cgtttccctatcatgttgaccgagcgcatgctgtatcagcctggcttgagcaacgatatc
ctggccgacgaagccaaggtgaaacagtggtgcgacaactatgtggcagccctgaccgaa
gcagaatcgggtggcttcatcttcagcgccgaggctttcctcgacccagagcgtcaggtc
tatctgcctaaggtgacggtacgtaagcatggtatcgatacccactacctgttctcttac
gacttcctgcagtcgagcgactaccagcgtatgacggccttggccgaagcgcttgaaggc
ctgatcgaagagggcggttatgtgaagcgtggcgagcgcatgaaggaaatttcttcattc
gtagacgccctggattggctgatgaacgactctaagcgtggcctctacatccagcgctac
aaaggattgggtgagatgaaccctgagcagctatgggaaaccaccatggatcctgagtcg
cgtcgcatgctgaaggtgaccatcgaagatgccatcgccgccgaccaactgtttacctgt
ctgatgggtgatcaggttgagccgcgtcgtgacttcatcgagtctaatgccctcaacgtg
gccaacctcgacgtataa
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