Shewanella loihica: Shew_0050
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Entry
Shew_0050 CDS
T00489
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
slo
Shewanella loihica
Pathway
slo03030
DNA replication
slo03430
Mismatch repair
slo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew_0050
03430 Mismatch repair
Shew_0050
03440 Homologous recombination
Shew_0050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_0050
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_0050
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shew_0050
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shew_0050
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shew_0050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ABO21923
UniProt:
A3Q8X5
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All DBs
Position
complement(61076..61795)
Genome browser
AA seq
239 aa
AA seq
DB search
MLKKLLSPPSIDWPGKFEQRLKTTEHQGLRQYYLGGLPDPDTPLAEVELLAMDFETTGLN
VDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHGITHSDILDAPDLSAIF
EQVLEQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFPLIDTMALESEIQKRQHGGLLQ
RLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELLQAQIAHHFDPSRPIKEFWC
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagaagctattgtcaccgccgagcatcgactggccgggtaagtttgagcagcgg
ctcaagaccacggaacatcaggggttacgccagtattatctgggcggcctgccggatccc
gacacgccactggcagaggtcgagctgctggcgatggacttcgagaccacgggcctgaac
gtcgataaggatgatatcgtcagcataggcactgtgccctttacacttcggcgcatcttt
ctcaaccgtgcccagcactggaccgtcagacccagagaacagctggccgaggagtcggtg
atcatccacggcatcacccacagcgacatactggacgcgccggatctctccgccattttc
gaacaggtgctggagcagatggcgggcaagatcatggtggtgcactatcaagcgatagaa
agattattcctggagcgggcactgatccgccgcatccatcaggggatagagtttcccctg
atagatactatggcgctggaatcagagatacagaagcgccagcatggcggcttgctacag
cgcctcaagggcgacaagccgggctcggtgcgattgggtcagagccgctccagatacggc
ctgcccagctatccgccccacaacgccctgaccgacgccatcgccaccgccgagctgctg
caggcgcagatcgcccatcacttcgaccccagccgtcccatcaaagagttctggtgctag
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