Shewanella loihica: Shew_0312
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Entry
Shew_0312 CDS
T00489
Name
(GenBank) ABC transporter-related protein
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
slo
Shewanella loihica
Pathway
slo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Shew_0312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
slo02000
]
Shew_0312
02044 Secretion system [BR:
slo02044
]
Shew_0312
Transporters [BR:
slo02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Shew_0312
Secretion system [BR:
slo02044
]
Type I secretion system
Adhesin protein transporter
Shew_0312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
Peptidase_C39
AAA_15
AAA_13
AAA_29
AAA_22
MMR_HSR1
DUF87
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABO22184
UniProt:
A3Q9N6
LinkDB
All DBs
Position
complement(338680..340860)
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AA seq
726 aa
AA seq
DB search
MQASASPKTEQWTVSASQRVTVDPLLDSLVLLTEYFGSPCSSESLAAGLPLSGSILTPEL
VPQAAGRAGLAAKLTRKGLDQISPILLPCILLLKDKNACLLREIDIDKDRAVIQLPETGG
EEELSIEALEAMYVGYLFLVKQQYRGDMGLDLHLHDSRTHWLIQTLKDSAPIYRDALIAS
VLVNLFALVSPLFIMNVYDKVVPNLAFESLWVLAIGAGIAYIFDLIMRQLRAYLIDVAGK
KVDIIVSSRLFAKAIGIPLEKRSPSIGGMARQLGEFDSIREILTSATITTLVDLPFALFF
MLIIYIVAGDLAIIPVIGGCIIIGYTLLMQPRLKAAIEESNKFSSLKHGHLIESLASIES
IKSSGAEGLVQKSWQQMIGHTANWQLKVKKISTSVTNVANFTVQLSVVCVVILGVYRVAD
NDISMGGIIAAVILSSRAISPMAQLAGLMTRGNHTASALRQLDQIMTQEDEFENKGHLVS
KHRLKGQINADHVSFNYPGSERPVLHPMSLSIAPGERIAIIGRNGSGKSTLAKLLVGLYQ
PTKGSLRYDGLDSAQIHPTDLRRNFGYLPQDITLFHGTIRDNILFGTRQVTEHQLIRAVQ
LSGVNQFTDIETEGLDQQVGEGGQSLSRGQRQTIALARATLNDPPVLLMDEPTASLDARA
EKQFIRAMRNVSKERTLLLITHKMHLLNLVDRILVLDRGHLVADGPKEQVLNQLAKGLLS
GGPKSE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcttcagcgtctccaaaaactgaacaatggacagtttcagcctcccaaagagtg
actgtcgatcccttgttagacagtttagtgttattgacagaatacttcggcagcccctgc
tccagcgagtcattagccgctggcctaccgctgtcggggagcattttgacaccagaactt
gtgcctcaggctgccggtcgagccggtttagcagccaagctcacccgtaagggactggat
cagatctcgcctattcttctgccttgtatcttgctcctcaaagataagaatgcctgtcta
ttaagagagatcgacatagacaaagacagggccgtcattcagctaccagaaaccggtggt
gaggaagagctcagcattgaggcgctcgaggccatgtatgtcggctatctgttcctcgtg
aagcagcaataccgtggcgacatgggcttagatctgcatctacacgacagtcgcactcac
tggcttattcagaccctgaaagattcagcgcctatctaccgcgacgccctaatcgcctca
gtgctggttaacctgtttgccctggtatcccccctgtttatcatgaacgtttatgacaag
gtggtgcccaacctcgccttcgagtccctatgggtgctcgccattggcgccggcatcgcc
tatatcttcgacttaattatgcgacaactcagggcctacctgatcgacgtcgccggcaag
aaggtcgatatcatagtgtcatcgcggcttttcgctaaggctatcggcataccgctagag
aagcgttcccccagcataggcggcatggcgcggcaactaggcgagttcgacagcatacgc
gagatcttaacctcggcaaccatcaccaccttggtcgatctgccgttcgcgctgtttttc
atgttgatcatctatatcgtcgccggcgacctggccatcattcctgtgatcggcggctgt
atcattatcggctataccctattgatgcaacccaggctcaaagcggctatcgaagagagc
aacaaattctccagcctaaaacacggtcatcttatcgagtccctggcctccatcgagtcg
ataaaatccagtggcgccgaaggcttagtgcagaagagctggcagcagatgataggtcat
accgccaactggcagttgaaggtgaagaagatctccacctcggtcaccaacgtcgccaat
tttaccgtgcagctttcagtggtctgcgtggtgatcttaggggtctatcgtgtcgccgat
aacgacatctcaatgggcggcattatcgccgcggttatcctgtcgagccgcgccatctca
cccatggcgcagttggcaggcctgatgacccgaggcaaccataccgccagcgccctaaga
cagcttgatcagatcatgacccaagaggatgagtttgaaaataaaggccatctggtcagc
aaacatcgtctgaaagggcagatcaatgccgatcatgtcagctttaattacccaggctct
gagcgacccgtgctgcaccccatgtcgctgtcgatcgcaccgggtgagcgcatcgccatc
ataggacgcaacggctcgggcaagagtaccctggccaagctgttggtaggcctctaccaa
ccgaccaaaggtagcctgcgctatgacggattggattcggcgcagatccacccgacggat
ctgcgtagaaacttcggttacctgccacaggacatcacactgttccacggcacgattcgc
gacaacatattgttcggtacccgtcaggtcaccgagcatcaactgatccgtgcggtacag
ctctctggcgtcaaccagtttaccgatatcgagaccgaaggcttagatcaacaggtcggc
gagggggggcaatccctctcccgtggtcaacgccaaactatcgcgctggcgagggccacc
ttgaatgacccaccggtactcctgatggatgagccgaccgccagcctggatgcccgcgcc
gagaagcaatttatccgcgccatgagaaatgtctctaaggagcgcaccctgctgctgatc
acccacaagatgcacctgctcaacttagtggaccgcatcttggtattagatcgtggccat
ctggtggccgacggtccgaaggagcaggtgctcaaccagctcgccaaggggctgttatcg
ggagggccgaagagtgagtaa
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