Shewanella loihica: Shew_0339
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Entry
Shew_0339 CDS
T00489
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_0339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_0339
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew_0339
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shew_0339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABO22211
UniProt:
A3Q9R3
LinkDB
All DBs
Position
384583..385890
Genome browser
AA seq
435 aa
AA seq
DB search
MSETHLTNQKFADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKT
LAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYG
GESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSM
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIEHYIQHSIPVTNYDSEALLDDIPPPVRIHRKHSPRPTGRSGGGKPQGGR
PGARPRRHDRTRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttaactaatcaaaagtttgccgacttttctctgcatccagagata
caacaggcactagtcgaaagcggctttgaatattgcacgcctatccaggcattatcatta
ccgattttactcgaacataaagatatcgcaggccaagcgcagacgggtacaggtaaaacc
ctggcttttctggtcgccaccttcaatcatctgctaaccacacctatccccgacggacgt
caactcaatcagcccagagccatagtgatggcaccgacccgcgaactggctattcagatc
gccaaggacggggagctgctggcgaaacataccggccttaaggtgggtattgtctacggc
ggcgagagctacgaagtgcagcgcaaggtgttggataagggcgtcgatatcctgatcggt
accactggtcgtatcatagattatgtgcgccagggggtgatcaacctcagcgccatccag
gcggtggtgttggacgaagccgaccgcatgttcgatctcggtttcatcaaagatatccgc
ttcctcttcagacgtatgccagacgccaacgagcgtttgaacatgctgttctcggcgact
ctgtcgatgaaggtgcaggagctggcctacgatcacatgaatgatcccgagaaggtcgag
atcgcgccaagcgagaagacatctaagaacatcaccgaagagatcttctatccatcgatg
gaagataagatgcgtctgctgctaactctgatcgaagaagattggccagagaaggcgatc
gtgttctctaacactaagcacagctgtgaaaacctttgggctcacctggagggtgacggt
caccgtgttggtttgcttaccggtgatgtaccgcagaagaaacgtatccgcattctcgag
cagttcaccaaaggcgagctggatatcctggtcgctacagacgttgctgcgcgcggtctg
catatctcagacgtgtcccatgtctataactatgatctgcctgatgactgtgaagactat
gtacaccgtatcggtcgtaccggacgtgcgggtcagaaaggggtctctgtcagtttcgct
tgtgaagagtacgccctgaatctgccagctatcgagcactatattcaacatagtattcct
gtgactaactacgacagcgaagcgctgctcgatgatattccgccaccagtgcgcattcat
cgtaagcactcgccacgtcctacaggccgttccggtggtggtaagccacagggtggtcgt
ccgggtgcacgtccaagacgccacgacaggacccgtagacacagttaa
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