Shewanella loihica: Shew_0430
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Entry
Shew_0430 CDS
T00489
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_0430
03036 Chromosome and associated proteins [BR:
slo03036
]
Shew_0430
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_0430
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Shew_0430
Chromosome and associated proteins [BR:
slo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Shew_0430
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Shew_0430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-DNA_bdg
HU-CCDC81_euk_1
HU-CCDC81_bac_2
NA37
Motif
Other DBs
NCBI-ProteinID:
ABO22302
UniProt:
A3QA04
LinkDB
All DBs
Position
complement(482940..483212)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELVAKIAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAARTG
RNPQTGKEIQIPAAVVPKFKAGKTLKDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaactgaacttgttgcaaaaatagcggaaagcgctgaactcactaaagctgaa
gctgctcgcgccttaaagtctttcgaagaaacggtagcggaagcgatgaagaacggcgaa
aaaatctctattgtaggttttggttctttcgagaccactagccgtgcagcacgtacaggc
cgcaacccacagacgggcaaagaaattcagatcccagcggctgtagtacctaagtttaaa
gccggtaagacgctaaaagacagcgtaaactaa
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