Shewanella loihica: Shew_0472
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Entry
Shew_0472 CDS
T00489
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_0472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_0472
03110 Chaperones and folding catalysts [BR:
slo03110
]
Shew_0472
03029 Mitochondrial biogenesis [BR:
slo03029
]
Shew_0472
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slo04147
]
Shew_0472
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Shew_0472
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Shew_0472
Chaperones and folding catalysts [BR:
slo03110
]
Heat shock proteins
HSP60 / Chaperonin
Shew_0472
Mitochondrial biogenesis [BR:
slo03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Shew_0472
Exosome [BR:
slo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Shew_0472
Exosomal proteins of other body fluids (saliva and urine)
Shew_0472
Exosomal proteins of breast cancer cells
Shew_0472
Exosomal proteins of colorectal cancer cells
Shew_0472
Exosomal proteins of bladder cancer cells
Shew_0472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABO22344
UniProt:
A3QA46
LinkDB
All DBs
Position
529453..531102
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI
DKAVVAAVAELKTLSQECSDTKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELENPYILLVDKKISNIRELLPILEGL
AKTGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDY
DREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI
RVASKIGELDVANEDQKHGVTIALRAMEAPLRQIATNAGEEASVVANNVKNGSGNYGYNA
GSDVYGDMLEMGILDPTKVTRSALQFASSIAGLMITTEAMVGDVPQEAGAGDMGGMGGGM
GGMGGMGMM
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagttttatttggcaatgacgctcgcgtaaaaatgcttgcgggcgta
aacgtactggctaacgcagttaaagttactctaggccctaaaggccgtaacgtagttcta
gacaagagcttcggcgcgccgctgatcaccaaagacggtgtatcggtagctaaagagatc
gaactggaagataagttcgaaaacatgggcgcgcagatggtgaaagaagttgcttctaaa
gccaacgacgccgccggtgacggtaccactactgcaaccgtactggcacaagccatcgta
accgaaggcctgaaagccgttgccgctggcatgaacccaatggatcttaagcgcggtatc
gacaaggcggttgtagctgccgttgccgagctgaaaaccctgtctcaagagtgtagcgac
actaaggctatcgctcaggtaggtaccatctctgctaactctgacgagtcaatcggcgaa
atcatcgcaactgcgatggaaaaagttggtaaagaaggcgtgatcacagttgaagaaggt
caggccctagagaacgagctggacgtggttgaaggtatgcagttcgaccgtggttacctg
tctccatacttcatcaacaagccagaaaccggcagcgttgaacttgaaaacccatacatc
ctattggttgacaagaagatctctaacatccgtgagctactgcctatccttgaaggtctg
gcgaaaaccggtaagccactgatgatcatcgcagaagacgttgaaggcgaagccctggcg
actctggttgtgaacaacatgcgcggcatcgttaaagtggctgcggttaaggcacctggt
ttcggtgaccgtcgtaaggcgatgctacaagatatcgctatcctgactggcggtactgtg
attgccgaagagatcggtcttgagcttgaaaaagcgactctggaagacctaggtactgct
aagcgcgtggttatcaccaaagatgacactaccatcatcgacggtaccggcgagcaagag
cagatctctgcccgtgttgcccagatcaagatccaggcagaagagtctacttcagactac
gaccgtgaaaaactacaagagcgtatggctaagctggccggcggtgttgcagtgatcaaa
gtcggtgccgctaccgaagttgaaatgaaagagaagaaggctcgcgtagaagacgcgctg
cacgcgactcgcgccgccgttgaagaaggtgtggttgccggtggtggtgttgccctgatc
cgcgttgcttctaagattggtgagctggacgtggctaacgaagaccagaagcacggtgtg
actatcgcactgcgcgccatggaagcgcctctacgtcaaatcgcgaccaacgcaggtgaa
gaagcctcagttgtagcgaacaatgttaagaacggctctggtaactatggttacaacgcc
ggtagcgatgtgtatggtgacatgctagagatgggtattcttgacccaactaaggtgact
cgtagcgcgctacagttcgcttcatctatcgcaggtctgatgatcactaccgaagctatg
gtgggtgatgtaccgcaagaagctggtgctggcgatatgggcggcatgggcggcggtatg
ggtggtatgggcggcatgggcatgatgtaa
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integrated database retrieval system
