Shewanella loihica: Shew_0512
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Entry
Shew_0512 CDS
T00489
Name
(GenBank) ABC transporter-related protein
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
slo
Shewanella loihica
Pathway
slo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Shew_0512
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
slo02000
]
Shew_0512
02044 Secretion system [BR:
slo02044
]
Shew_0512
Transporters [BR:
slo02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Shew_0512
Secretion system [BR:
slo02044
]
Type I secretion system
Adhesin protein transporter
Shew_0512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_16
AAA_29
AAA_22
AAA_15
AAA_23
Zeta_toxin
AAA_24
AAA_35
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ABO22384
UniProt:
A3QA86
LinkDB
All DBs
Position
complement(578448..580547)
Genome browser
AA seq
699 aa
AA seq
DB search
MNQHLDPIHLPKSLLIALFHQLGLSVQASNIDKSDLHDRLTHLEAYILLKKHHVGIKVQA
LDANLLVHSVYPFILLPQDGEPMVARRSNHSFQYLSKDNQWLTLDKLPGAGHVFLVESLP
AQSRSSSVFASHLAKLRPWYRPIFWLSLLSSLSGLAIPLFTMAVYDRVIGGQAPQILPSI
ALGAALALGIFVASRLLRAQALANVSNRFARDLSGITFNRLLSMPLSLLSRVGLSSHIAR
MRNAEKVRSLVAGPGGGGLIDLPFTLIALVAITLLSGVLVLVPLGMLLLFYLVMKALDKF
TQAAAPTISGEYQNSLNELSTHLLPLKSAGESGAWYEQFMRRAREHCRQNFLYSKRAGLN
AAVAHAMGLFTALATVFTGIFLVLNQSITPGALIACVMLIWRITGPAQLAFASRQKFTLL
KGAVDQFDRFMGVTTEFNELRLDSPNLNQTPALSFKHVTLRYSADSEPALSGVTLDIETG
ETVAIIGPNGSGKTSLLLTAIGVIEPQAGFVTVNGKNLKQFDPEIFRQWAAYSPTNSEIL
PGTLADNLRLAKPEASDEELKQALTDAGGASLLQALKQNIDANLFSRGTSMFSAVESSYI
SLARALLKGSPLLVMDEPIANRNPFARQAFIQTLKRLKGKTTILFTTHDQALIQQADKVV
ILDKGTVVYAGPLPNQDGVTTQGATNQDSTPSMEASQNE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcacctagatccgatacatctacccaagtcgctgctgatcgccctgttccat
cagctgggccttagcgtgcaggccagcaacatagacaagagcgatctccacgacaggctc
acccatctcgaagcctatattctgctgaagaagcatcatgtgggcatcaaggtgcaggca
ctggatgctaacctcctggtccacagcgtctaccccttcatcttgctgcctcaggatggc
gagcctatggtggcgcggcgcagcaaccacagttttcaatacttaagcaaagataatcaa
tggctcacactcgacaagctgccgggcgccggccacgtgtttctggtggagagcctgccg
gcccagagccgaagcagcagcgtgttcgcctcccatctcgccaagctcaggccctggtat
cgccccatcttctggctgagtctgctatccagcctgagtggcctcgccattccactcttt
accatggcggtgtacgacagggtcatcggcggtcaggcgccgcagatcctgcccagcatt
gccttgggtgcggcccttgccttgggaatttttgtcgccagtcggctgcttagggcacag
gcactggccaatgtcagcaaccgcttcgccagggatctttccggcatcaccttcaaccgc
ctgctgagcatgccccttagcctgctctcacgggtcggcctctccagccatatcgccagg
atgcgcaacgccgagaaggtacgcagcctggtggccggccctggcggaggcggcctcatc
gatctgccctttaccctcatagctctggtcgccattaccctattgagtggtgttttggtg
ctggtgccgctaggcatgttgctgctcttctatctggtgatgaaggcgctggacaaattt
acccaggccgccgcgcccaccatcagcggcgagtaccagaacagcctgaacgagctctcg
actcacctgctaccacttaagagcgccggcgagagtggtgcctggtacgagcaatttatg
cgccgcgcccgggagcattgccggcagaactttctctacagcaaacgtgcgggactcaac
gcggcggtggcccatgccatgggactgtttaccgccctagccacagtgtttaccggcatc
ttcctggtgctcaaccagagcatcaccccgggggcgctgatcgcctgcgtcatgttgatc
tggcggatcacaggcccggcgcagctggcctttgcctcgcggcagaagtttaccctgctc
aagggcgccgtcgatcagttcgaccgtttcatgggcgtaaccacagagttcaatgagctc
aggctcgactcgccaaatctcaaccagacaccggcgctctcctttaagcatgtgaccttg
agatacagcgccgacagcgagcccgctctctccggggtaaccctcgacatcgaaactggc
gagacggtggccatcataggccccaacggcagcggcaagacctcgctgctgctcaccgcc
ataggagttatcgagccccaggccggcttcgtcaccgtcaacggcaaaaacctgaaacaa
tttgaccctgagatcttccgtcagtgggccgcctacagccccaccaacagcgagatctta
cccggcaccctggcggacaacctgcgcctggccaagccagaggccagcgacgaagagctt
aagcaggccctcaccgatgccggcggcgcctcgctgctgcaggcgctaaaacagaacata
gatgccaacctcttttcccgtggcaccagcatgttctcggcggtggaaagcagctatatc
agcctggcaagggccctgttgaaaggctctcccctgctggtgatggatgagccgatagcc
aatcgcaatccctttgcccgacaggcctttatccagaccctcaaacgcctcaagggcaag
accaccatcctgttcaccactcacgatcaggcgctgattcaacaggccgacaaggtggtg
atcctcgacaaaggcactgtggtctacgcagggcctctgcctaaccaagacggtgtgacg
acacaaggtgcaaccaaccaggactcaacccccagcatggaggcctcacaaaatgaatga
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