Shewanella loihica: Shew_0531
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Entry
Shew_0531 CDS
T00489
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_0531
03009 Ribosome biogenesis [BR:
slo03009
]
Shew_0531
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew_0531
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shew_0531
Ribosome biogenesis [BR:
slo03009
]
Prokaryotic type
rRNA helicases
Shew_0531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABO22403
UniProt:
A3QAA5
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All DBs
Position
complement(600553..602352)
Genome browser
AA seq
599 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEVDTEV
LAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDRSDRAPRGRRESRPTPANLGQA
DTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPE
GMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERKSHRKGNRDNG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
ctcgacgagctaggttatgaaaaacctaccccgatccaggccgccagtatcgaccccctc
atggcgggtaaagatattctaggccaggcgcaaaccggtacgggtaaaaccggtgccttt
gccctgcccctactcaacgctatcgatcctaaccgcaacgtaccacaaattctggtactg
gcgccgacccgcgaactggcggtacaggttgccgaagccttcggtagctactccaaattt
atgaagggcctgcacgtactgcctatctacggcggtcagagcatgcatcaacagcttaac
gccttgcgtcgtggcccacagattgtcgtgggtacaccgggtcgtgtcatggaccacatg
cgtcgtggcaccctgaagctagagacactcaacgccttggtactcgatgaggccgatgaa
atgctcaagatgggctttatcgacgacatagagtggatcctggagcacacgccacaggag
cgtcaactggcactcttctcggccaccatgccagagcagatcaagcgcgtcgccaacaag
tacctgcaaacgccggtacacatcagcatcgcagctagccacacaaccgttgagtctatc
gagcagcgcttcgtgcaggtgtctcagcacaacaaactcgaggccctggtacgcgtactg
gaagttgaaaacaccgaaggtatcatcatcttcgtgcgtacccgtaactcttgtgtcgaa
ctggccgagaagctggaagcccgcggttatgcctcatcgccactgcatggtgacatgaac
caacaggctcgtgagcgcgccgtcgatcagcttaagcgtggcaaactggatatcctgatc
gccaccgacgtggccgcccgtggtctggacgttgagcgtatcggtcacgtgatcaactat
gatatcccctacgacaccgaagcctatgtacaccgtatcggtcgtaccggccgcgccggc
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgcatgctgcgcaccatc
gagcgtgcgaccaagagccgtatctcaccgatgaacgtgccaagccctgagacagtggcc
gagcgtcgtctgtcgcgtctgggagagcaggtttccaacaccatcgacaacgagtcgctg
gacttcatgcatggcgccgttgcccagctgtgtcagcaactggaagtggacaccgaagta
cttgccgccgcactgctcaacatggtgcagcaggagcgtcctctgcagctgcctcctatt
caggagcgtcagcgcgatagccgtgacgagcgcaactcgcgcgaccgtggcgaccgctca
gatcgtgctcctcgtggccgccgcgaatcgcgtccgactccggcaaacctgggccaggca
gataccctgaaagatcatccagacgtcaagatgtgccgttacgtgctagacgtgggtcgt
gaccatggtgtgggtgtaggcaacatcgtcggcgcagttgccaacgaagccaacatcgac
agccgttacataggtcagatccaattgttcgatcagatcacctcgatcgacctgccagaa
ggcatgccaaaggatgtcctgcaacacctgaagaaggttcgcgtatgtggcaagccgcta
aacatccgcgaagcgggcagcgaaattgtcaatgccagcgatgacaaccgtgcaccgcgt
cgtcgcaagcctgtgggtgagcgcaagtcacaccgtaagggcaacagagacaacggctaa
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