Shewanella loihica: Shew_0535
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Entry
Shew_0535 CDS
T00489
Name
(GenBank) single-strand binding protein
KO
K03111
single-strand DNA-binding protein
Organism
slo
Shewanella loihica
Pathway
slo03030
DNA replication
slo03430
Mismatch repair
slo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew_0535
03430 Mismatch repair
Shew_0535
03440 Homologous recombination
Shew_0535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_0535
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_0535
03029 Mitochondrial biogenesis [BR:
slo03029
]
Shew_0535
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Shew_0535
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
Shew_0535
TLS (translesion DNA synthesis) factors
Other SOS response factors
Shew_0535
Mitochondrial biogenesis [BR:
slo03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
Shew_0535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
SSB_1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABO22407
UniProt:
A3QAA9
LinkDB
All DBs
Position
608229..608891
Genome browser
AA seq
220 aa
AA seq
DB search
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQMQERTEWHNIVMY
RRLAEIAGEYLKKGSKVYLEGKLQTSKWQDQQTGQDRYKTEINVNEMQMLDSRGQGQGGQ
GGQQGYGAPQQQNQYAPQQSAPAARPQQPQHSAPQGGYGAQQQAAPQQQGYGAQPQQAPA
YAPKPQAAPQQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgtggtgtcaataaggtaattttggtcggtaacctagggaaagatcccgaa
gttcgttacatgccaaacggcaacgccgtagccaactttacagtggcgaccagtgagtct
tggaaagaccagcaaggtcagatgcaagaacgtacagaatggcacaacattgtaatgtac
cgtcgtcttgcggagatcgccggtgagtacctgaagaagggctcgaaagtgtatctggaa
ggtaaactgcagaccagcaagtggcaggatcagcagaccggacaagatcgctacaagaca
gagatcaacgttaacgagatgcagatgctggatagccgtggccaaggccaaggcggtcag
ggtggccaacaaggttacggtgcgccgcaacagcaaaaccaatacgcaccacagcagtcg
gcgccagccgcgcgtccacagcagccgcaacactcggctcctcaaggtgggtacggtgcc
cagcaacaggcagcaccacagcagcaaggttatggcgctcaaccacagcaggcccctgcc
tatgcacctaagccgcaggcggctccacaacagcaagcgccgcagcagcgtccagcacct
cagccacagcagaacttcacgccggatctggatgacggttgggacgacgatatcccgttc
tag
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