Shewanella loihica: Shew_0555
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Entry
Shew_0555 CDS
T00489
Name
(GenBank) MscS Mechanosensitive ion channel
KO
K22051
miniconductance mechanosensitive channel
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
slo02000
]
Shew_0555
Transporters [BR:
slo02000
]
Other transporters
Pores ion channels [TC:
1
]
Shew_0555
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
ABO22427
UniProt:
A3QAC9
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All DBs
Position
complement(626928..630110)
Genome browser
AA seq
1060 aa
AA seq
DB search
MSRILLIILCLISFSGAANSPLNLNKRLGLGQEPQVASKSTAEQLSLLEEQLTEQQALQS
SFDAIIHQYQSQKQALTQQLKEAATPLEYNPNQDLSQQASLSYLRLSELKETEANLATQV
NELIKRQQQLPSLISQANLTLAKHKQATSNDNQPLSEMQRRVYVQSLSTLESELASSQKQ
IALTQQQLALVRSQLVQQEALIERLNGAIAEQRHKATAATIAASQIETSITDDAIAIKLN
AQNQAYGEQLKQLTHEVTNVMTQQEQAETQYQFQAKQITNIQQQIALVKLNSAFGERFLR
ILYSLPKPPSQDKISNEIANARLARYQIEQDQTLHPLLGAVEQLTPLQSKLVGAQKELQR
QLLENYDLYLGELAELRVLYEQLGQQYQTLKTTLNEHLFWVANANSIDGYWLGDLYQSTQ
WLLTQAPWHQVQDSLSEQSTLWSWWVILMVLCLVMQDLVTPKFTQLMAKNVTYVGNVTQD
KFIYSFNTLIGSLLYSCIKPLPLISGGLIFYFSNHNLVSSVGMGILAIGMLYQLYRLTYL
LALDKGLLIGHFKGDKAIIRAGQQRLRALTVLAMPIVGVIGFTEVLETSLVRNSLGRGAF
ILLALMLFWFYRDMLSLSKQEHHYHQDDKNKRLLQKLLWSILILLPPACAVLAFRGYYFT
AYQMLLQLQLSLILSLSFMLLYQLIKRWMLIERRRIAFNRAKAKRAEILAQREKEDDPNS
NEPPDTYEEPVVDLETISSQSLGLVRSLLTLAFLISLIGLWTQTHSAIFSFLDGITLWTS
SSTVDGIAQQLPITLKSLLLGLIIVGFSLMIATNLPGLLELMILQRLDLTQGTGFAITTV
SRYLVVFFGMLSGFSTLGMEWSKLQWLVAALSVGLGFGLQEIFANFISGLIILFEKPVRI
GDTVTIRELTGTVSKIQIRATTIVDWDRKEIIVPNKAFITEQLINWSLSDPITRVIVYVS
VARDSDPARVEAALYQAVKECDDALTTPEPEVWFAGFGQHTQDYEIRAYAKDMNTRWPLR
HKLHKQVSKKLRENHLELAYPQLEVHISGQSKETQGIIRS
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtatattactgattattctctgtctaatctcattctcaggcgccgcaaattcg
cccctgaatctcaacaaacgcctgggactaggacaggagcctcaggtcgccagcaagagc
accgccgagcagctgagtctgctggaggagcagctcaccgagcaacaggccctgcagtcc
agcttcgacgccatcattcaccagtatcagagccagaaacaggccctgacacagcagctt
aaagaagccgccacgccgctggaatacaaccctaatcaagatctcagccagcaggcgtca
ctctcctacctgagactgtctgagctcaaagagacagaggctaacctggccactcaggtc
aacgagttaatcaaacgccagcaacagcttcctagcctgataagccaagccaacctgacc
ctggccaagcacaaacaggcgaccagcaatgacaaccagcccctgagcgagatgcagcgt
cgcgtctatgttcagagcctttcgaccctggaatctgagctggccagcagccagaaacag
atcgccctgacccaacagcaactggcgctggtgcgcagccaactggtgcagcaagaagcc
cttatcgaacgtctcaacggcgccatcgccgagcagcgtcacaaggcaacggcggccacc
atcgccgccagtcagatagaaacctccatcacagacgatgccatcgccatcaagttgaac
gcgcagaaccaggcctatggcgagcagctgaaacagctgacccatgaggtcaccaatgtg
atgacacagcaggagcaggccgagacccaataccagttccaggccaagcagatcactaat
attcagcagcagatcgccttggtgaagcttaactcggccttcggcgagcgcttcctgcgt
atcctctactcactgcccaagccgccaagccaggacaagatcagcaatgagatcgccaat
gcccgtctggcccgctatcagatagagcaagaccagacactgcatccgctgctcggcgcc
gtcgagcagctcacgccgctgcagagcaagctggtcggtgcccagaaagagctgcagcgc
cagctgctggaaaactatgatctctaccttggcgaactggccgagttaagggttttgtat
gagcagctaggccagcagtatcagactcttaagaccacgctcaacgagcacctgttttgg
gtggccaatgccaacagcatagacggctactggctgggcgacctgtatcagagtacccaa
tggctgctgacccaggcgccttggcatcaggtacaggactcactaagcgaacagagcacc
ctctggtcctggtgggtgatcttgatggtgctctgcctggtaatgcaggacttggtcaca
cctaaatttactcagctgatggcgaagaacgtcacctatgtaggtaacgtcacgcaagat
aagtttatctatagtttcaataccttgattggctcgctgctctatagctgcatcaagcca
ctgccattgatcagcggcggtctgatcttctacttcagcaaccataacctggtctcctcg
gtgggcatgggcatactggccataggcatgctgtaccagctctatcgcctcacctatctg
ctggcgctggataagggcttgttaatcggccacttcaagggcgacaaggcgatcatacgc
gccggtcagcaacgcctacgcgccctgaccgtacttgcgatgccgattgtcggcgtgatc
ggcttcaccgaggtgctagaaacttcgctggtgcgcaacagcctgggacgcggcgccttc
atcctactggccctcatgctgttctggttctaccgcgacatgctgagcctgtcgaagcag
gaacatcactatcaccaggacgataagaacaagcgcttgctgcagaagctgctctggtcg
atactcatcctgctgccaccagcctgtgccgtgctggccttcaggggctactacttcacc
gcctatcagatgctgctgcagctgcagctgtcgttgatcttatccctaagctttatgctg
ctgtatcagttgattaagcgctggatgctgatcgagcgacgccgcatcgcctttaaccgc
gccaaggccaagcgcgccgagatcttggcccagcgggagaaagaagatgaccccaacagt
aacgagccaccggacacctatgaagagccagtggtggatctggagaccatctccagccag
tctctggggctggtgcgttcactgctaacgctggccttcctgatcagcctgatcggcctc
tggactcagacccatagcgccatcttctcgtttctggatggcatcaccctgtggaccagc
tcgagcacggtcgacggcatcgcccagcagctccctatcactctcaagtccctgctgctt
ggccttatcatagtcggcttctcgctgatgatagccaccaacctgccaggtctgctggag
ctgatgattctgcagcggctagatctcacccagggcacgggcttcgccatcaccactgtg
agtcgctatctggtggtcttcttcggtatgctcagcggcttttccaccctggggatggag
tggtctaagctgcaatggctggtcgcggcgctctcggtgggcttgggtttcggcctgcag
gagatcttcgccaacttcatctcgggcctgatcatcttgttcgaaaagccggtgcgtatc
ggcgataccgtcaccattcgcgagctgaccggtacggtaagtaagatccagatccgcgcc
accacgattgtcgactgggacagaaaagagataatcgtccccaacaaggccttcattacc
gagcagctgatcaactggtcgctgtcagacccgatcactagggtgatcgtctatgtctcg
gtcgccagggactcagatcccgcgcgagtcgaggcggcgctctatcaggcggttaaggag
tgtgacgatgccctgaccacgccggagcccgaggtctggtttgccggatttggtcagcat
actcaggactacgagatccgcgcctatgccaaggatatgaacacccgctggccgcttagg
cataagctgcacaagcaggtcagtaagaaactgagagagaatcatctggagctcgcctat
ccgcagctcgaggtgcatattagtggtcaaagtaaagagactcaggggataattagaagc
taa
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