Shewanella loihica: Shew_0980
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Entry
Shew_0980 CDS
T00489
Name
(GenBank) PAS/PAC sensor hybrid histidine kinase
Organism
slo
Shewanella loihica
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c
HK_sensor_dom_bact
HisKA
Response_reg
dCache_1
Hpt
PAS
PAS_4
PAS_9
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ABO22851
UniProt:
A3QBK3
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Position
1127012..1130527
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AA seq
1171 aa
AA seq
DB search
MVRQISRLSSLFGGRSLLLAASMLVLMVALVIIASFESQLNQNIVDGLRSDLEIQSEQVN
NQAQDRLNRYFNNLRFLFETPPISGLSRARNNQGIDPVDETRYDQWRHRLETIFVAFLQN
NREYEQLRILSSDGMELIRVDRRGGAVQVIDDTNLQDKQGRDYFQASKDLQQGEIYTSPI
NLNREFGKIDYPYRPMLRLATPIFDDNGGHFGLLIVNINANALLSSFKRLVPAPIELVLT
DSDGYFLVHPDEEMRFSRDLHPDLVWDKHYQQSKTLKRNFELVLDSYHDNKPYYAYRRAI
TLSNDAQSGRLTATLMAPKQYVQELAVSRRISVYSFMLAVGVLFLFVVIILGRSARSSQA
LAKEKAQSAAIIDGSKDAIIGVGTSGVVNNWNRAAELLFGYDADYAKGHFINQLALLPEV
DLAALVSKANQGNKTLNLDAELPLNEGRIVDLYVSVSPILGENKHALGVAIIIRDVSIEK
QAAKKIQLVNAELEKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKDS
LTERQARYLEMAEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVK
AQEKGIEFVIDVVDLRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRAHSRLRETGE
LEFICEVSDTGIGIAEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSF
ESHKGQGSCFIFTMVLHQGEFKLMAPEALLHEMTCSVLLVNEAQQACVEAAIARLGGKLL
PGSPIRDWLNQDAPVPDVLPHVLIVEQRHSLLTDLDSLWPTLTATHKRLPRVLAFQKSAD
GNKALRNIELEYLNNPLLFSEFMQKFGAPKASSGVENVHPQVTPIISEEEAHRIKGARVL
VVDDNEINIEVALGILSELPLEFVRAINGQEALTKLRECEQEGLGVHCILMDCQMPILNG
YDCTRAIRAGEAGEAFVDTPIIAMTASAMMGERDKCIEAGMNDYITKPIVAERLQEKVTD
WLISVCEFGDLPTLVEAAPHEEIQVKDEDYVWNRQLALSRLMNNEVLFAEICQMYHDTSP
AQVGELEEAIAAKDYEKVRQLSHGLKGLSSSIGAIQLQEQFLSLEMEAKMKNCDKLNLLF
GVIKPCYAKLMERLQETLEPKDEVQNASAQT
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgacagatttcacgcttatcttctctctttggcggacgctcactgctgctggcc
gcctccatgctggtgcttatggtggcgcttgtcatcatcgccagcttcgaatctcaatta
aatcagaatattgtcgacggtctgcgctccgatctcgagattcagagcgagcaggtcaac
aatcaggcccaggacaggcttaaccgttacttcaacaacctacgttttctgtttgagacc
ccgcctatctccggcctttcccgggccagaaataatcaggggatcgaccctgtggacgag
acccgctacgaccagtggcgtcaccgactggaaactatcttcgttgccttcttacagaac
aatcgcgagtatgaacagctgcgcatattgagcagtgatggcatggagcttatccgggta
gacaggcgcggcggcgccgtgcaggtgatagatgatactaacttgcaagacaagcagggg
cgggattattttcaggccagtaaagatctgcagcagggggagatctatacctcgcccatc
aacttaaaccgtgagtttggcaagatagattatccctaccgccccatgttgcgtctggca
accccgatcttcgatgacaacggcggtcacttcggtctgcttatcgtcaacatcaatgcc
aacgctctactctcctctttcaagcgcctggtgcctgcgcccatagagcttgtgctgacc
gacagcgatggctatttcttggtgcatcccgatgaggagatgcgttttagccgcgacctg
catccagacctggtgtgggataaacattatcagcagagcaagacacttaagcgtaacttc
gagttggtgctcgacagctatcacgataataagccctattatgcctatcgccgcgccatc
acgctctctaacgatgcccagagcggtcggcttaccgcgaccctaatggcgcccaagcaa
tatgtgcaggaactagcggtctcccggcgcatcagtgtctacagcttcatgttggccgtg
ggagtcttgtttctgtttgtggtcatcatactggggcgcagcgcccgtagcagtcaggcg
ctggccaaggagaaggcgcagtcggcggcgatcatcgatggctccaaggatgccatcata
ggcgtgggtaccagcggcgtggtcaacaactggaaccgcgccgccgagttactgtttggc
tatgacgccgactacgccaagggccactttatcaatcagctggcgctgctgcccgaggtc
gacctggcggccttggtctcaaaggctaatcagggtaacaagacacttaatctggacgcc
gagctgccattgaacgaggggcgcatcgtcgatctctatgtgtcggtttcccccatcctg
ggggagaacaagcatgccctgggcgtggccatcatcatacgtgatgtctccatcgagaag
caggcggccaagaagatccagctggtgaacgccgagctcgagaagaaggtggcgataaga
acccaggagctgcagaaggccagcctagtgaagagcagcttcatctctaacatcagccat
gagatgcgtacgccgctaaatggcatagtaggtactttgaatctggtgcgtaaagactcg
cttaccgagcgccaggcgaggtacctggagatggccgaggtgagcgttaatacgctttct
gcgctgattaacgatgtgctggatctttccaagatagaggcgggcaagctggatttagac
atgagcagctttaatcccctcaacctgatcgagagtgtctgcagcagcatggcggtgaag
gcccaggagaaggggatagagtttgtcatcgatgtggtcgaccttcgctgccagagcgta
gacagcgacccccacaggatcactcagatcctcaccaatctgataaacaatgccatcaaa
tttaccgaccatggctatatcaaggtcagggcccacagccgcctccgagagacgggggag
ctagagtttatctgtgaggtgtctgacacagggatagggatcgccgaggagaatcaggcc
aagctgtttaccgctttctctcaggccacttcgagtattgcggcccagtatggtggcaca
gggctgggactctctatctgtaaggaactcagcgaattactcaacggcaagatgagtttc
gagtcccacaaagggcaggggagctgcttcatcttcaccatggtgttgcatcagggcgag
tttaagctgatggcgcccgaggcgctgctgcacgagatgacctgtagcgtcttgctggtg
aatgaggcgcagcaggcctgcgtcgaggcggcaattgcccggctcggtggtaagctgcta
ccgggctcgcccatacgcgactggctcaatcaggatgctcccgtacccgatgttctgccc
cacgtgttaatcgtggagcagcgtcactccctgcttaccgatctcgacagtctctggccg
acactgacggcgactcataagcgactgccgagagtattggcctttcaaaagagcgccgat
ggcaataaggcgctgagaaatattgagcttgagtatctcaataacccgctgctcttctcc
gaatttatgcagaagtttggcgcgcccaaagcgagttctggcgtagaaaatgttcatccc
caagtgactcccataatctctgaggaggaggcccatcgcatcaaaggtgctcgggtgttg
gtggtcgatgataatgagatcaacatagaggttgccctggggatcttgtccgagctgccg
ctggaatttgtcagggccatcaatggtcaggaggcgttaaccaagctgagggagtgcgag
caagaggggctgggcgtgcattgcatcttgatggactgtcagatgccgatcctcaatggc
tatgactgtacccgggcgatccgtgccggggaagcgggcgaggcgtttgtcgatacgccc
attattgccatgacggccagtgccatgatgggcgagcgtgacaagtgcatcgaggcgggc
atgaatgactatatcaccaagcctatcgtggccgagcgtctgcaggagaaagtgaccgat
tggctgatctctgtctgtgagtttggtgacttgcctactttagttgaggctgcgccccat
gaggagatccaagtaaaggatgaggactatgtctggaaccgtcaactggccctcagccgg
ttgatgaacaatgaggtgctgttcgccgagatctgccagatgtatcacgacacgtcgccg
gcacaagttggcgagctggaggaggcgatcgccgctaaggattatgagaaggtgcgtcag
ctcagtcatggcctcaaggggctctccagcagcataggtgccatccagctacaggagcag
tttttgagcctggagatggaggcgaagatgaagaactgtgataagttgaatctactcttc
ggggtaataaaaccttgctatgccaagctcatggagcggctgcaggagacgctcgagccc
aaggatgaggtacaaaacgcgtctgcccagacttag
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