Shewanella loihica: Shew_0996
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Entry
Shew_0996 CDS
T00489
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
slo
Shewanella loihica
Pathway
slo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shew_0996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slo03021
]
Shew_0996
Transcription machinery [BR:
slo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shew_0996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
TPR_12
TMPIT
FAP206
Motif
Other DBs
NCBI-ProteinID:
ABO22867
UniProt:
A3QBL9
LinkDB
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Position
complement(1153477..1155327)
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AA seq
616 aa
AA seq
DB search
MISMEQTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYE
QAPDADEIMMSEDSTDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAEDMAPTA
THIGSELSDDDLDDEDDEGDDEDDDGDEEDSPKGPDPEEARERFTQLREAHEKALKVIEL
KGREHPEATAALFDIGEIFKEFRLVPKQFDRLVKNMREMMDKVRIQERLIMKLCVEQAKM
PKKNFVKVYTSNESSIEWFNEEIAAKKPYAEGLEMVAEDVQRCRAKLDAIENETGLAIAA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATG
ESLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggagcaaactccgcagtcgcaacttaaattgttgcttgccaaaggtaaa
gagcaaggttatttaacctatgcagaagtgaacgatcacttgcctgcagatatggtcgac
tcagaccagatcgaagatattatccagatgattaatgacatgggtattcgcgtctatgag
caggcgccggatgccgatgagatcatgatgtctgaagacagcaccgatgaagatgctgcc
gaagaagctgccgcggctctggctacggttgaagctgaactgggtcgtaccacagatccc
gtgcgtatgtacatgcgcgagatgggtacggtagaacttctgacccgcgaaggcgaaatc
gtaatcgccaagcgtatcgaagaaggtatcaacacggttcaggcgtctgtagccgaatat
cctcaagcgatcgccatgatccttgagcagtacgaccgctacgaagctgaagaagtcaga
ctatcagacattatctctggatttgttgaccctaatgccgaagacatggcgccgacggcg
acccatatcggctcagaattgtcggacgacgatctcgacgacgaagatgacgagggcgat
gacgaggacgatgacggcgatgaagaagattcgccaaaaggcccggatccggaagaagcg
cgcgagcgtttcacccagctgcgtgaagcacacgaaaaagccttaaaagtgattgaactt
aaaggtcgtgaacacccagaagcgactgccgccctgttcgacattggcgagatcttcaaa
gagttccgtctggtacctaagcagttcgaccgcctggtgaagaacatgcgcgaaatgatg
gacaaggtgcgtattcaagagcgcctcatcatgaagctgtgtgtcgagcaggccaagatg
ccgaagaagaacttcgttaaggtctacacctctaacgagagcagcatcgaatggttcaac
gaagagattgccgccaagaagccctatgccgaagggctggagatggttgccgaagacgtt
caacgttgccgcgccaagctcgatgccatcgagaatgaaaccggcctggccattgccgcc
atcaaggatatcaaccgtcgcatgtctatcggtgaagccaaggctcgccgcgctaagaaa
gaaatggttgaggctaacctgcgtctggtaatttctatcgcgaagaaatacaccaaccgt
ggcctacagttcctggatctgatccaggaaggtaacatcggcctgatgaaggcggtagac
aagtttgaataccgtcgtggttacaagttctcgacctatgcaacctggtggatccgtcag
gcgatcacgcgttcgattgccgaccaggcacgtaccattcgtatcccggttcatatgatt
gagaccatcaacaagctcaaccgtatcagccgtcagatgctacaagagatgggacgcgag
ccgtcacctgaagagctggccgagcgcatgttgatgccggaagataagatccgcaaggta
ctcaagatcgccaaagagcctatctcaatggaaacccctatcggcgatgatgaagattcg
catttaggtgatttcatcgaggatactaccctcgagttgccactggacagcgccaccggt
gagagcctgaagaacgccacccacgaagtgctcgccggcctgaccgcccgtgaagccaag
gttctgcgcatgcgtttcggtatcgatatgaacaccgaccacaccctagaagaagtgggc
aagcagtttgacgtgacccgtgagcgtattcgtcagatcgaggccaaggcactgcgtaag
ctgcgtcacccgtctcgctcagagatcttgaaatccttcctggatgaatag
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