Shewanella loihica: Shew_1054
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Entry
Shew_1054 CDS
T00489
Name
(GenBank) RNAse III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
slo
Shewanella loihica
Pathway
slo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Shew_1054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_1054
03009 Ribosome biogenesis [BR:
slo03009
]
Shew_1054
03036 Chromosome and associated proteins [BR:
slo03036
]
Shew_1054
Enzymes [BR:
slo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Shew_1054
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shew_1054
Ribosome biogenesis [BR:
slo03009
]
Eukaryotic type
90S particles
RNase
Shew_1054
Prokaryotic type
rRNA processing factors
Shew_1054
Chromosome and associated proteins [BR:
slo03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Shew_1054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DnaG_cat_HB
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
ABO22925
UniProt:
A3QBS7
LinkDB
All DBs
Position
1216933..1217610
Genome browser
AA seq
225 aa
AA seq
DB search
MEPIKNLPRLGRILGYQFQQIALLEQALTHRSAASKHNERLEFLGDSILSIVISDALYHQ
FPKATEGDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAMEAI
IGAIYLDADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVVNIS
GEAHAQTFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLERIKK
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggaacccattaagaatctaccgcgtttgggtagaatattaggttatcaatttcagcag
atcgcgctgctggagcaggcgttaactcaccgcagtgcggcgagcaagcataacgaaaga
ctggagtttttaggcgactctattctctctatcgtcatctctgacgccttgtatcatcag
tttcccaaggcgaccgagggtgacctgagccggatgcgcgccacactagtgtgcggcaag
atgctagccgagatcgccaaggagtttaagcttggcgattatcttaagctgggccctggt
gagctcaagagcggtggttttcgccgcgagtctatcctggccgacgccatggaggcgatc
ataggcgccatctatctggacgccgatatcgagacctgtcgcactttagtactaaactgg
tataagagccgtcttgcggtgatcgagccggtcaatcagaaagatcccaagaccctgctg
caggagcacctgcagggatttaagcagccgctccctgtctatacagtggtgaacatcagc
ggcgaagcccatgcgcaaaccttcaccgtggagtgtaaggtggagcagctaaaagaagcc
gttatcggcgtggccaattcccgcagaaaggcggagcagattgccgcagcagaagtgttg
gagcgtattaagaaatga
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