Shewanella loihica: Shew_1123
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Entry
Shew_1123 CDS
T00489
Name
(GenBank) A/G-specific DNA-adenine glycosylase
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
slo
Shewanella loihica
Pathway
slo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shew_1123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_1123
Enzymes [BR:
slo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
Shew_1123
DNA repair and recombination proteins [BR:
slo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Shew_1123
Prokaryotic type
Shew_1123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
NUDIX_4
HHH
EndIII_4Fe-2S
DUF6308
Motif
Other DBs
NCBI-ProteinID:
ABO22994
UniProt:
A3QBZ6
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All DBs
Position
complement(1298053..1299159)
Genome browser
AA seq
368 aa
AA seq
DB search
MPFWLRKTLPLYRLSAMKTEQFHQRIVTWYDKHGRKHLPWQQDKTPYKVWVSEIMLQQTQ
VATVIPYFEAFMARFPTILDLANADQDEVLHHWTGLGYYARARNLHKSAQLIASDYDGVF
PTQFEQVLALPGIGRSTAGAVLSLSLGQHHPILDGNVKRVLARHGAIAGWPGKREVEQQL
WQLTNSLTPKTGVTQYNQAMMDIGASICTRSKPRCELCPVAIDCKAQLMGRQTEFPGKKP
KKTIPEKLGYMLVIKDDDRVLMSKRPPAGIWGGLWCFPQFDSQEALEEFAKTNGLTLISE
EPIDSFRHTFSHFHLDISAFVAHQTTSAHEIMEESGSLWYNIAKPPKVGLAAATERILAS
LGSVSNKE
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgccattttggttgagaaaaaccttgcccctctatagactgagcgccatgaaaacagag
caatttcaccagcgcatcgtcacctggtacgacaaacacggacgcaagcatcttccctgg
caacaagataagaccccttataaggtatgggtgtccgagatcatgttgcaacagactcag
gttgccacagttatcccctacttcgaagcctttatggcgcgcttccccactatcttggac
ttggcaaatgccgatcaggatgaggtgctgcaccactggaccggcctaggctattacgcc
agggcgcgtaacctacataagagtgcccagctgatcgccagcgactatgatggtgtcttc
ccaacccaattcgagcaggtactcgccctaccgggtattggccgctcgaccgctggggcg
gtactctcactctctcttggacaacatcaccccatattagatggcaacgtcaagcgagtg
ctcgcaagacatggcgccatagctggctggcccggcaaacgcgaggtggagcagcagcta
tggcagctcaccaacagcctgacccctaagacaggcgtaacccaatataatcaggcgatg
atggatattggcgccagtatctgcacccgctctaagcccaggtgcgagctctgccccgtc
gccatcgactgtaaggcgcagctgatgggccgccagactgagtttcccggcaagaaaccg
aagaagacgattccggaaaagctcggctatatgctagtgattaaagatgacgatagggtg
ctgatgagcaaacgcccacctgcggggatctggggcgggctctggtgcttcccacagttt
gacagccaggaggcgctcgaggagtttgccaaaacaaacggcctaactcttattagtgag
gagcccatagacagttttcgtcacaccttcagccatttccatctggatatcagcgccttt
gtggcacaccaaaccacaagcgcacatgagatcatggaagagagcggctctctctggtat
aacatagccaagccacccaaggttggtctggccgccgccacagagcggatcctcgccagc
ttaggttcagtatcaaataaggagtaa
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