Shewanella loihica: Shew_1209
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Entry
Shew_1209 CDS
T00489
Name
(GenBank) Pseudouridylate synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slo03016
]
Shew_1209
Enzymes [BR:
slo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Shew_1209
Transfer RNA biogenesis [BR:
slo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Shew_1209
Prokaryotic type
Shew_1209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
STN
Motif
Other DBs
NCBI-ProteinID:
ABO23079
UniProt:
A3QC81
LinkDB
All DBs
Position
1403308..1404375
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AA seq
355 aa
AA seq
DB search
MTPLHYLYGQPEASADLRTYNSDFIVQEILPFLPTGEGEHHMLHIRKEGLNTADVARMLS
SFAGVHPKEVTFAGQKDRHAITEQWFGVRIPGKSMPDWQSLNSEQLTVLSSARHGKKLRT
GALAGNRFTLTLRAVSDMDALVRRIELIKATGVPNYFGEQRFGHDGKNLIFGRQMLSGKK
KVKDRNKRSIYLSAVRSYLFNQVVSERLRLHQLKTLDGDCVMLAGSKSYFVANPWDESLY
GRLAENDIQLSAPMWGRGLALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQERRPLLLAP
QQLSYEIQEDTLVIKFALPAGSFATSVLRELVNYQDVKEREYQARKAAASEQAHD
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccccactacattatttgtatggccagcccgaggcgagcgccgacttaagaacctac
aacagcgattttatcgtgcaggagatcttgccatttcttccgacgggtgagggcgagcac
cacatgctgcacatccgcaaggaggggttaaacaccgcggatgtggcacgcatgctctca
agctttgccggtgtgcatccaaaagaggtgaccttcgccggccagaaagacagacacgcc
atcacagagcagtggtttggggtgcgtattcccggcaagagcatgccagactggcagtcg
ctcaatagcgagcagctcacggtgctatcaagcgcccgtcacggcaagaagctgcgcacc
ggcgccctggcgggtaaccgcttcaccctgaccctaagggccgtgtctgacatggacgca
ctggtgcgacgcatcgagctgattaaagccacaggcgtgcctaactattttggcgagcag
cgcttcggccatgacggaaagaacctgattttcggtcgtcagatgctctcgggcaaaaag
aaggtgaaagacagaaacaagcgcagcatctatctctcggcggtgcgctcgtatctcttc
aaccaggtagtgagtgagcggcttcgcctacaccagctcaagacactcgatggtgactgt
gtgatgttggccggtagcaagagctacttcgtggccaatccctgggatgaatcgctgtat
ggtcgtctggcggaaaacgatattcaactctcggcgcccatgtggggtcggggcctggcg
ctgagtgaggccgaggcgttagccttcgagcagggcgtttgtggtcagtatcctgaggat
cttgccggcctcgagcaggcggggctcaatcaggagcgccgcccgctgcttctcgcgccg
cagcagctaagctatgagatccaggaagacaccttagtgattaagttcgccctgccggcc
ggtagttttgccacctctgtgctgcgggaactggtgaattatcaagatgtcaaagagcgg
gaatatcaggccagaaaggccgcagcgagcgagcaagcccatgattaa
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