Shewanella loihica: Shew_1245
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Entry
Shew_1245 CDS
T00489
Name
(GenBank) transcriptional regulator, LysR family
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slo03000
]
Shew_1245
Transcription factors [BR:
slo03000
]
Prokaryotic type
Helix-turn-helix
LysR family
Shew_1245
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Ortholog
Paralog
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GFIT
Motif
Pfam:
LysR_substrate
HTH_1
PBP_like_2
HTH_5
HTH_20
HTH_30
MarR_2
PBP_like
Motif
Other DBs
NCBI-ProteinID:
ABO23115
UniProt:
A3QCB7
LinkDB
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Position
complement(1443918..1444859)
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AA seq
313 aa
AA seq
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MSLRLQAHLGTLRQMEILLAVYDSGSVSGAAETLHLTQPTISMQLKKLADVIGFPLYNIV
GRKVVFTEAGLEVVKSATEILDSFARLEMSLSDMGELKSGTLRLAVVTTSKYFIPHLLGP
FCERYPNVAVQLNVGNRQQIIERLKQGIDDFYVFSHPPADLNTDSIEFFNNPLVAIAQEN
HPLVSQDGVSLAELCDAPFLMRENGSGTRLAIERFMAKQGVKLNVKMTIESNEAIKHSVM
SGLGVSILSAHTLAFGGNTGLAQLNVKELPINSNWYFLWLKSKRPSAIAQAFLTHVESEG
REMLLTELAKHRL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcagactacaggcacatcttggtaccctcaggcagatggagatcttgctggct
gtctatgatagcggcagcgtcagcggcgccgccgagaccctgcacctcactcagccgacc
atctcgatgcagctcaagaagctcgccgatgtgataggtttccccctgtataacatagtg
ggtcgcaaggtggtgtttaccgaggcggggctggaggtggttaaatcggccacagagatc
ctcgacagctttgcgaggctggagatgtcgctgtcggacatgggggagctcaaatcgggt
accctgcgcctggcggtggtgaccacctcgaaatactttattccccacctgctcggcccc
ttctgcgagcgctatcccaatgtcgcagtgcagctaaatgtgggtaaccgccagcagatc
attgagcgcctcaaacagggcatcgacgacttctacgtgttcagtcatcccccagcggat
ctcaacacagatagtatcgaattcttcaacaatcctctggtggctatcgcccaggagaat
catcccctggtcagtcaggatggcgtttcgttagccgagctctgtgatgcgcccttctta
atgcgtgaaaatggctcgggcacccgcttggcgattgagcgtttcatggcgaaacagggg
gtgaagcttaacgtgaagatgaccatagagagtaatgaggcgatcaaacactcggtgatg
tcaggactgggcgtcagcatactctcggcccataccctcgcctttggcggcaataccggg
ctggcgcagctgaatgtgaaggaattgccgatcaattccaactggtattttctctggctt
aaatcaaaacgtccctcggcaatcgctcaggccttcttgacccatgtggaaagcgaggga
cgtgagatgctactcaccgagctggcaaaacacaggctttag
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