Shewanella loihica: Shew_1362
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Entry
Shew_1362 CDS
T00489
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
slo
Shewanella loihica
Pathway
slo02020
Two-component system
slo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Shew_1362
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shew_1362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slo03000
]
Shew_1362
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
slo02035
]
Shew_1362
Transcription factors [BR:
slo03000
]
Prokaryotic type
Helix-turn-helix
Other families
Shew_1362
Bacterial motility proteins [BR:
slo02035
]
Flagellar system
Flagellar assembly proteins
Others
Shew_1362
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA
bpMoxR
AAA_7
AAA_2
Motif
Other DBs
NCBI-ProteinID:
ABO23231
UniProt:
A3QCN3
LinkDB
All DBs
Position
1570438..1571871
Genome browser
AA seq
477 aa
AA seq
DB search
MMQTDQRILLVGNQSERINRLSCVFEFLGEQVELLAVDRLESRMSNTRYRALVIAQEAQS
KTLLQSIATSMPWQPILLLGSNGDVTAGNVLGCIEEPLNYPQLTELLHFCQVFVQAKRPD
IPTSGNQTKLFRSLVGRSEGIAQVRHLINQVAGSDATVLVLGQSGTGKEVVARNIHYISD
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISARKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGSKPIHTNVRVIAATHRELETMIANGEFREDLFYRLNVFPV
EMPALCERKDDIPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHSWSGNVRELSNLVERL
TILYPGGLVDVNDLPLKYRHIDVPEYQVQVSEEELERDALASIFSDEVAVDIPESRFPSE
LPPEGVNLKDLLAELEIDMIRQALDQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacagatcaacgaattctacttgtcggtaatcagtcagagcgaattaatcgc
ttatcttgtgtttttgagtttcttggtgagcaggtagagttgcttgccgtcgacagactc
gaatctcgaatgtcgaatacccgctatagagcacttgtcattgcacaagaggctcaatct
aagaccttgttgcaatctattgccacctcaatgccttggcaacccatcttgttgttaggc
tctaatggcgacgtgactgcaggcaatgtattaggttgtattgaagagccgttaaattat
cctcagttgaccgaactcctgcatttttgccaggtgtttgtgcaggctaagcgtccggat
atacctaccagtggtaaccagactaagttatttcgcagcctggtgggccgcagtgaaggt
atcgcccaggtgcgtcacctgatcaaccaggtggccggttccgatgccaccgtattggtt
ctaggtcagtctggtaccggcaaagaggtggttgcacgcaatatccactatatttccgat
cgccgtgatggccccttcatcccggtaaactgtggcgccattccgccagaattgctcgag
agtgagctgtttggtcatgagaagggctcatttaccggcgcaatcagtgcccgtaaggga
cgcttcgagctcgccgaagggggcaccctgtttctcgatgagataggcgatatgcccctg
cagatgcaggtgaaactgctgcgtgtattgcaggagcgcgtcttcgagcgtgtcggtggc
agcaaaccgattcataccaatgtgcgcgtcatcgcggcaacccacagagagctagagacc
atgatcgccaacggcgagtttagggaagatctcttctatcgcctcaatgtgtttcctgtc
gagatgcccgccctgtgtgagcgcaaagacgatatcccgcttttgctgcaggagttggtc
agccgcgtttataacgaggggcgtggcaaggtgcgttttacccagcgtgcgattgagtca
ctcaaggagcatagctggtcgggtaacgtgcgtgaactctctaacctggtcgagcgtctg
acgatcctttatccgggtggcttggtcgacgttaatgacctgccgcttaaataccgccat
attgatgtgcctgaatatcaggtgcaggtcagtgaagaggagttggaacgcgatgcgctg
gcctctatcttcagcgatgaggtagcggtcgatattcccgagagccgtttccccagcgag
ttgccacccgaaggagtgaaccttaaggatctattggccgagcttgagatcgatatgatt
cgccaggcactggatcaacaagacaatgtggtggcccgcgccgcagaaatgcttggcatt
cgccgtaccacactggttgagaagatgcgcaagtatggcatgagtaaagattaa
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