Shewanella loihica: Shew_1532
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Entry
Shew_1532 CDS
T00489
Name
(GenBank) type III restriction enzyme, res subunit
KO
K19789
DNA repair protein RadD
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_1532
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Shew_1532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_30
AAA
Zn_ribbon_3
DUF7577
SLFN-g3_helicase
AAA_22
AAA_16
DZR
zf-tcix
Zn_Ribbon_1
SNF2-rel_dom
VESA1_N
DZR_2
UPF0547
Motif
Other DBs
NCBI-ProteinID:
ABO23399
UniProt:
A3QD51
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All DBs
Position
complement(1756230..1757969)
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AA seq
579 aa
AA seq
DB search
MQLRDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSIVIAELARIAKGRTLVLTHVKELV
AQNAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNPKQFDEPYSLVIIDECHRV
SNEKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCI
FELPMRPLIKQGFLTPPKVLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIV
EQIKQLTNTRAGTIIFAATVRHAKEIMTLLDSPEAGLITADTPSQERDAIIDAFKRRELS
YLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKRDCLVIDYAANGFD
LFFPEVGRPKPDSKSVPVQVPCPECGFANVFWGLVDGDGDIIEHFGRRCQAVVDDGDGKH
QCDFRFRAKACPNCGEENDIAAKVCQHCQSTLIDPDKRLKEVLQQKHHHLFRCQEMLFEA
DNDRLRVRYLDIEGNDFCCYFNFATKAQIRAFYGVFVHQHTRTPGQKQPTFSKVDQVIAA
RDYFRMPDLLLLKKGKRGWELVESFFDYRGRFDSQHKFV
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
ttgcaactcagagattaccaacgccaagccgtcgatgctgccatcaaccactttaagcgc
agtgatgactccgccctgctcgtcctcccgaccggagccggcaagagtatcgtcatcgca
gagcttgcccgcatcgccaaggggcgcaccctggtgcttactcacgtcaaggaactggtg
gcgcaaaacgccgagaaggttggactactgaccgatgaggccagtatcttttccgccggg
ctgaaacagaaatcgacccgcaacaagacggtggtggccagcattcaatcggcggtacga
aatcccaagcagtttgacgagccctattcgctggtgatcatcgatgagtgtcaccgagtc
tccaacgagaaagagagccagtatcagcagctgcttagtcatctaagaacaaagaattcg
aaactcaggctcttgggcctgacggccaccccctatcgcttgggcagcggctggatctac
cgctatcactaccatggcaagattggcaataccgagcagccggtgttcgagcactgtatc
ttcgagctgccgatgcgcccgctcattaaacagggctttctgacaccgcccaaggtactt
gatggcctgtcggcccagtatgatttcagcgagctctcacccaatgccaacggtgaatac
aatgaggccgaagtcgactctctgctgcatcacgcgggccgcgccaccaaggcgattgtg
gagcagataaaacagctcaccaacacccgcgccggtaccatcatcttcgcggcgaccgtg
cgtcatgccaaagagatcatgaccctgctggacagccccgaggcggggctaatcaccgca
gatacaccaagccaggagcgcgatgccattatcgatgccttcaaacgccgcgagctcagc
tacctggtcaatgttgcggtactcaccacgggcttcgacgccccccatgtggatcttatc
gccatcttgaggcccacggcttctgtgagcctgttccagcaaatggtcggccggggcttg
aggatctgcgaaggcaagcgggattgcttagtgatcgactacgccgccaacggcttcgac
ctcttctttcccgaagtcggtcgccccaaacccgacagcaagagcgtgccagtacaggtc
ccctgccccgagtgtggctttgccaacgtcttctgggggttagtcgatggtgatggcgat
attatcgagcacttcggacgacgctgtcaggccgtggtcgatgacggcgacggcaagcac
caatgcgactttcgatttcgcgccaaggcctgcccaaattgcggcgaagaaaacgatatt
gccgccaaggtgtgccagcattgtcagtcaacgcttatagacccggacaagcgtcttaaa
gaggtgctacaacagaaacatcatcacctgttccgttgccaggagatgctgtttgaggcc
gacaacgacaggctcagggtgcgttacctggatatcgagggtaacgatttctgctgttac
ttcaattttgccaccaaggcgcagatccgcgccttctatggcgtctttgtgcatcaacac
acacgcacaccaggccagaaacaacccacctttagcaaggtcgaccaggtgatcgccgcg
cgggactattttcgtatgccggatctgctgctcctcaagaagggcaaacgcggctgggaa
cttgtcgagagtttcttcgactatcggggccgattcgatagccagcataagtttgtatga
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