Shewanella loihica: Shew_1593
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Entry
Shew_1593 CDS
T00489
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_1593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_1593
03009 Ribosome biogenesis [BR:
slo03009
]
Shew_1593
Enzymes [BR:
slo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Shew_1593
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shew_1593
Ribosome biogenesis [BR:
slo03009
]
Prokaryotic type
rRNA processing factors
Shew_1593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABO23460
UniProt:
A3QDB2
LinkDB
All DBs
Position
complement(1823406..1826792)
Genome browser
AA seq
1128 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDAAEL
KWDLKVLQHHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQA
KQHVALVRPDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVTRHRKDDQISESSYKLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAP
APAKPAEKAQEPGLIAKLFAAIGKLFGGEPEQPKEEVKKEQPRRNAQNRNSRRNNRRNDT
RKSRDEGKETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQSQSKDTESQAQQPKQ
EAARERRQRRNMRRKVRVQSEQQLADEAALAIEVAEKANDEQVQVPAAEATADDKPQRQK
RQPRKSKPKQDKADKLEEETQAEQVADEDTASEQPAVETQAANEPKDTEVTTQVEAHADE
AQAEEASAQPQEGESEGKREPREGQRRSRRSPRHLRAAGQRRRRDEEGNGEVNNGEPAFI
PNEVETAPLLGEQLEQEGSVVEAVSEVQATATEQEAVKQEADEVTTVAETTVTETTVTET
TVAEEAPAKAAAEEASQEESKPKPRRRAPKAKVASEEETSVEEAQQSLPLAGEAKASLKE
EVQAELDLTSTPEEVKASQEAAPQAEDVAAQAEEPAAVETAPVETPEVETEAKTEAPAAK
ESSAASAPMAKPAAVPAPTAKVKPAAKVEATPAEDKPEETASDEAEKPAPKATSRFGSMV
SSTMTKPEVEARALVDTPSGRQYEATAKEASAEPVKRGNSANSEMARP
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcagtctgaagagttgcgcgttgccctcgttgat
gggcaacaactgtacgatctcgacattgagagtcctggtcacgagcagaagaaagccaac
atctacaagggtaaaatcacccgcgtagaaccctctctcgaagcggctttcgtcgactat
ggcgccgagcgtcatggtttccttcccctcaaagaaattgcacgcgaatacttccctaaa
ggttactctttccaaggccgtcctaacatcaaagaggtggttaaagagggtcaggaagtt
atagtacagattgataaagaagagcgtggcaacaagggcgcggccctgaccaccttcatc
agtctagcaggctcttacctggtgctgatgccaaacaaccctcgcgccggcggtatctct
cgccgaatcgaaggtgatgagcgtaccgagctaaaagcggccatgtcagagctggaagtg
ccgcaaggcatggggcttatcgtgcgcaccgccggtgtaggtaaagacgcagccgagctg
aaatgggaccttaaggttctccagcaccactgggctgccatcgaagaagcggcgcaaaac
cgccccgcacctttcctgatccatcaggaaagtaacgttatcgtacgtgccatccgcgac
tacctgcgccgcgacgtgggcgaagtcctgatcgaccatcagcgtatctatgaacaggct
aagcaacacgtggctttggtgcgtccagactttgtcgatcgtatcaagcgctacgaggcg
gaagtaccgctgtttacccatttccagattgaaactcagatcgaatcggccttccagcgt
gaagtgcgtcttccttctggtggttctatcgttatcgatccaaccgaagcattgacctca
atcgatatcaactcggcccgtgcgactaagggcggcgatatcgaagaaactgcgctcaat
accaaccttgaagcggccgacgagattgctcgtcagctgcgtctgcgagacttgggcggc
ctggtggttatcgatttcatcgacatgacaccggtcagacaccaacgcgaagtcgaaaac
agaatgcgcgacgccgtgcatcacgacagagcccgtgtccaactaggacgcatctctcgc
ttcggtctgatggaaatgtcgcgtcagcgtctgcgtccgtcactggaagagtctgccgcg
cacctgtgtccacgctgtcatggccaaggcaccattcgtggtaccgaatcactggcgctc
tctatcctgcgtctgatggaagaggaagcgatcaaagagaacacctctcagattgaagcg
atcgtccctgtcgatgtcgccgccttcctgctcaacgaaaagcgtaaagccattcgtatc
acagagcagcgtcatgatgtcgaagtctacgtgatcccagatccaaacatgacgacacct
gactaccgtgtgacccgtcaccgcaaagacgatcagatcagcgagtcaagctacaagctg
ctcgagcagcctgagtctaagctctacgagccgcgcaaactagagcgcgccgcatcacct
gagccagcactgaaaggcttctcgacgccggttaaggatgcgccaacccaggcggctccc
gcaccagccaagccagctgaaaaggctcaagagccaggtttgatcgccaagctatttgcc
gccatcggcaagctgtttggtggtgagccagagcagccaaaggaagaggtcaagaaagag
cagcctcgtcgcaacgcgcagaaccgtaacagtcgtcgcaacaaccgtcgcaacgataca
cgtaagagccgcgacgaaggcaaagagacagacaacaaacgcagccgcagtgccaagcct
gatgacgcggatagccgcagtgcgaagagccgtaacgagaaacgccaaaagcgtgaccgt
gacgacaagccacagagtcagagcaaagacactgaaagccaagcgcagcaaccaaaacaa
gaagccgctcgcgagcgtcgtcaacgccgcaacatgcgccgtaaggtccgcgtgcagtca
gagcagcagctcgccgatgaggccgcactcgccatcgaagttgccgagaaggccaacgac
gagcaggtacaagtgccagctgcagaagccactgcagacgataagccacagcgtcagaag
cgtcagccacgtaagagcaagcctaagcaggataaagccgacaagctagaggaagagact
caagccgagcaagtcgccgatgaagacactgccagcgagcagccagctgtcgagactcaa
gccgcaaacgagcctaaagataccgaagtgacaacacaagtcgaagcgcatgcagacgaa
gctcaagctgaagaggctagtgctcaaccacaagagggcgagtcagaaggcaaacgcgag
ccaagagaaggccaacgtcgtagtcgtcgtagcccacgtcatctgcgcgccgccggtcaa
cgtcgtcgccgcgatgaagaaggcaatggtgaagttaacaatggcgagcccgccttcatt
ccaaatgaggtggaaactgcgcctctgctgggtgagcagctagagcaagaaggcagcgtt
gttgaagccgttagcgaagtacaggcaactgcgaccgagcaagaagcggtaaaacaagag
gctgacgaagtaactacagtcgctgaaacgactgtcaccgaaacgactgtcaccgaaacc
acagtcgctgaggaagcacctgctaaagcggccgccgaagaagcttctcaagaagagagc
aagcctaagccaagacgtcgtgcacctaaggccaaagtcgcttctgaagaggaaacctct
gtagaagaagctcagcagagcctaccactggcaggcgaggcgaaagccagtctgaaagag
gaagttcaggcggagctggatctaaccagcacacctgaagaggttaaggccagccaagaa
gcggcccctcaagcagaagacgtcgctgcgcaggccgaagagccagcagcagtagaaact
gcgccagtcgagacgcctgaagtcgaaactgaagctaagactgaagcgcctgctgccaaa
gagagcagcgccgcatcagcccctatggcaaagcctgcagccgtaccagccccaaccgct
aaggtgaaacctgcagctaaagttgaggcaacgccagcagaggataagccagaagagacg
gctagcgacgaggctgagaagcctgcgcctaaggccaccagccgcttcggttccatggtg
agttctaccatgaccaaacctgaggtagaagccagggcgctcgtcgacaccccatcggga
cgtcaatatgaagccacggcaaaagaagcgtcggccgagccagtgaaacgcggtaacagc
gcaaactcggaaatggcacgtccctaa
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