Shewanella loihica: Shew_1685
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Entry
Shew_1685 CDS
T00489
Name
(GenBank) Microbial collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
slo01002
]
Shew_1685
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
slo02042
]
Shew_1685
Enzymes [BR:
slo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
Shew_1685
Peptidases and inhibitors [BR:
slo01002
]
Metallo peptidases
Family M9
Shew_1685
Bacterial toxins [BR:
slo02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
Shew_1685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Peptidase_M9_N
PPC
Motif
Other DBs
NCBI-ProteinID:
ABO23552
UniProt:
A3QDK4
LinkDB
All DBs
Position
1935281..1938187
Genome browser
AA seq
968 aa
AA seq
DB search
MTTNMTNKTLGGARRFTPTALALACSLLATPLVLHAQDVQPQGMPAKDVKGPLSIKAAPS
TKAAPPTKAAPAQKVKPSADKAAASSRFDTSARKPIGARDAEQGEGVRPEKRDSKLEKGS
KGQSALPGMKGNQGATGPAAEADACNGYSQFDSLSGQALYDFVRQAEFSCISELYSHNDA
TAVKVYQADNVVAVANLAKATAASYDSSTGGELFNLFYFLRGAFYIEYYNDDLSYGDSRA
SDAMRELLLEYAKNPAFNSLSDMQGNTLQEYFIAWDSSYNYYDSVAVITDYLNQFSEQHL
ASWYHRSALTKALTTLYRGNWDEKYTKASMEYDALRAALLKVATSDYIINSEYAFESTDA
FHEFGRFYEYQAYWKLPDSLKTALNGGVQQYMAKFNRLSKQWVDAAGYLDYYNPGQCDSF
GICGWEDEVEASVLAIHYSCSDTIKIRAQQLTDQELQASCELMGEEEGLFHQILATGGEP
VADDYNEDLQVNIFDSYDDYDVYAGIIFGINTDNGGMYLEGTPSDPDNQARFIAHEATWT
DDILVWNLRHEYVHYLDGRFNLYGAFNYFDVDTGKSVWWAEGLAEYISHQNRYDEAIDIG
RSQEFSLSEILSNTYDSGTDRVYRWGYLAVRFLFEQHRSDVDALLVHARAGDTSAWLSYI
DNTIGTNYDAEWNSWLLTVTSNDTLLDGGIVTPVDSDGDGVIDSEDAFPNDPTEWADENG
NGIGDNADAANGGGQTGNCGAATISDGNITQEQAECVAGTGVNYYYTYVEQDNTQLYIST
TGGEGDLDIYFNQQTWASPSDYEVKSQNSGNEELISVVANRGWVYLSTVAVTPFEGVSLK
ISQSADTTPDNGSPQVADACLSQSPYSYGGVEFGQAVCVDDGHSSYYFYVPANTAAIEIN
TAHGSGDLNLYANATTWASPTAYQFKSENVGNSEQIRVVSPAEGWFYVSADGAPSSSGAS
LLVTLASN
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaatatgacaaataaaacattaggcggcgctcgccgcttcaccccaaccgcg
ctggccttggcctgctcgctactggccaccccgctggtgctgcacgctcaagatgttcag
ccacaaggcatgccggcaaaggatgtaaagggcccgctttcgataaaagccgcaccgtcg
acaaaagccgcgccgccgacgaaagccgcacctgcccagaaggtgaagccgtctgccgac
aaggccgctgcgagttctcgattcgacacgtctgcgcgcaagcccataggggcacgtgat
gcggagcagggcgaaggcgtgaggcctgagaagcgtgatagcaaattggagaaggggagt
aaggggcaatcggcgctgccaggcatgaagggcaatcaaggcgcgaccgggcctgcggcc
gaggcggatgcctgtaatggttacagccagttcgacagcttgagtggtcaggcgctgtac
gattttgttcgccaggcggagttttcctgtatctccgagctctattctcacaacgatgcc
accgcggtcaaggtgtatcaggccgacaatgtggtggccgtggcgaatctggccaaggca
acggctgcaagttacgatagcagcaccggcggcgagctgtttaacctgttctacttcctg
cgaggcgccttctacatagagtattacaacgatgatctcagctatggtgacagccgcgcc
agcgatgccatgcgtgagctgctactggaatatgccaagaacccggcctttaacagcctg
agcgacatgcagggcaacacactgcaggaatatttcatcgcctgggacagctcctacaac
tactatgattcggtggccgtgatcaccgattatctgaatcagtttagcgagcagcatctg
gcctcctggtaccacagaagcgcgctgaccaaggcgctcaccaccctgtatcgcggcaac
tgggatgaaaaatataccaaggcgtcgatggagtatgatgccctgcgcgccgccttgctc
aaggtggcgacctcggactacatcatcaactcagagtatgctttcgagtccacggatgcc
tttcacgagtttggacgtttctacgagtatcaggcctactggaaactaccggatagcctg
aaaacggccctcaacggcggcgtgcagcaatatatggccaagtttaaccgtctgtctaag
cagtgggtggatgcggccggttatctggattactacaaccctggccagtgcgacagcttc
ggcatctgcggctgggaggatgaggtggaagccagtgtgcttgctattcactacagctgc
tcggacaccatcaagatccgcgctcagcagctgacggatcaggagctgcaggcctcttgc
gagctcatgggtgaggaagaggggctgttccatcagatcctggcgaccggcggcgagcca
gtggcggacgactacaacgaagatctgcaggtcaatatcttcgatagctatgacgactat
gatgtctacgccggcatcatcttcggcatcaacactgacaacggcggcatgtacctggaa
ggcacgccgtcggatcccgacaaccaggcacgttttatcgcccacgaggccacttggacc
gacgacatcttggtgtggaacctgagacacgaatatgtgcactacctggatggtcgcttc
aatctttacggcgcctttaactacttcgatgtcgacacgggtaagtctgtgtggtgggcc
gagggcctcgccgaatacatctcccatcagaatcgctacgatgaggcgatcgatatcggc
cgcagccaagaatttagcctgagcgagatcttgtctaacacctatgacagcggtaccgac
agggtctatcgctggggctatctggcggtgcgcttcttgttcgagcagcacagaagcgat
gtggacgctttgttagttcacgcccgcgccggtgatacctcggcctggctcagctatatc
gacaacactatcggcacgaactatgacgcagagtggaacagctggctgctgacggtgact
agtaacgatacgctgctcgacggtggcatagtgaccccggtcgacagcgatggtgacggg
gtgatcgacagcgaagatgccttccccaacgatccgaccgagtgggcggatgagaatggt
aacggtatcggcgataacgccgatgcggccaatggtggtgggcagacggggaactgcggc
gccgcaaccatcagcgacggcaatattacccaggagcaggccgagtgtgtggcaggcaca
ggggtgaactactactatacctatgtcgagcaggataatactcagctctatatcagcacc
acgggcggtgagggcgatctggatatctactttaaccagcagacctgggcgagcccgagc
gactatgaggtgaagtcgcaaaacagcggcaacgaggagctgatcagcgtggtcgccaat
cgtggttgggtctatctctcgacggtagccgtgacgccatttgagggcgttagcctcaag
atcagccagagcgccgacactacgccggataacggttcgcctcaggtggcggatgcctgc
ctaagccaaagcccttatagttatggcggggtagagtttggtcaggcggtgtgtgtggac
gacggccattccagctattacttctatgtgccggccaatacggcggctatcgagatcaac
acggcccatggtagcggcgatctgaacctctacgccaacgcaacgacctgggcgagcccg
acggcttatcagttcaagtcggaaaacgtcggcaacagcgagcagatccgcgtcgtttca
cctgccgaaggctggttctatgtcagcgccgatggagcgccctcaagcagtggcgccagt
ttgctggttaccctggctagcaactaa
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