Shewanella loihica: Shew_1871
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Entry
Shew_1871 CDS
T00489
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
slo
Shewanella loihica
Pathway
slo03030
DNA replication
slo03430
Mismatch repair
slo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew_1871
03430 Mismatch repair
Shew_1871
03440 Homologous recombination
Shew_1871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_1871
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_1871
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shew_1871
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shew_1871
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shew_1871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ABO23737
UniProt:
A3QE39
LinkDB
All DBs
Position
complement(2149644..2150258)
Genome browser
AA seq
204 aa
AA seq
DB search
MSQDAIVVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDRFQQLMNPGFAVSSFIADYTG
ITNAMLSDAPSCETVMADFADFIQGCHLVAHNASFDQKFLTAEFARIDLEQSQPFACSLL
LARRLFQAVPNHQLGTLVNYLGIANDGVFHRALNDAEVTGALWLALSDAVSQRWACPAPS
FELMLKLQRQPKHQLEKFMRAYLG
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatgccatagtggtattggattttgaaaccacaggcctctcccccttacag
ggcgatcgtgccatcgagataggggcggttaaattacagcaaggtgtagtggtcgatagg
tttcagcagctgatgaatcccggctttgccgtcagcagtttcatcgctgattacacaggg
atcaccaatgcgatgctcagtgatgcgccaagttgcgagaccgtgatggctgactttgcc
gacttcatccagggatgtcatctggtggctcacaacgccagtttcgatcagaaattttta
acggcggaatttgcgcgcatcgacctggagcaatcccagccctttgcctgttcgctgctg
ctggcaagacgcctgtttcaagcggtgcctaaccatcagctaggcaccttagtgaattat
ttaggtatcgccaacgatggcgtgtttcaccgcgcgctgaacgacgccgaggttaccggt
gccttatggctggcgctgagcgatgcggtatcacagagatgggcctgccctgcacccagt
tttgaattgatgcttaagctacaacgtcaacctaagcatcagctagaaaagtttatgcga
gcctatttaggctaa
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