Shewanella loihica: Shew_1884
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Entry
Shew_1884 CDS
T00489
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_1884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_1884
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew_1884
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shew_1884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
AAA_22
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ABO23750
UniProt:
A3QE52
LinkDB
All DBs
Position
2168190..2169656
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AA seq
488 aa
AA seq
DB search
MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML
TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL
IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ
NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIKD
NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLIST
GISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIES
RLDHLLERREIEGFAPRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAPKEAKDKR
REDKPRGQSKSQGKATPYKGSSTDKKARPAKAKSAAPSDRGGKDQRLEHKVEEKPAFNPW
AESRPGKK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgcaaaccttggcctgccaaacgctgtgctcactaaccttgagcaacttggc
tacagccagccaacgccaatccagcaagaagccattcccctggcgctcaagggtaagaac
ctgatcgcggcggcgcaaaccggcagcggtaagacggcgactttcgtgctgcctatgctc
acgaccctgatgcaggggcagacacagcgcaagaagcgggcgcgggcaatcatattagcg
ccgacacgcgagttggtgctacaggtaaatgatcgcattggcgaatatggtaaaggctta
gggctggtatccatggccgtttatggcggcgtcgatgtgcaggcccaaaagcagcagttg
atcgagggcgtcgatatcgtggtggccaccccgggtcgtctgcgggatctctacacccag
agagcgatccgcttcgacgaggtggagctactggtgctcgatgaagccgatcgcatgttg
gatatgggctttatcgaggatatcaccaagatcttagataccctgccagaagagaggcag
aacctgctgttctccgccaccctgtctcgcccggtgcgcgagttggcgaaacaggcggtg
cctaaggcgatccacctgtcggtcactaagaatcaagatagccagccagatatcgagcag
tggatcaccacggtcgataaggataagaagtcggcgctgctcagtcagctgattaaagac
aatgcctggccccaggcgcttatttttatcgagaccaaacatggtgccgccaagttggtg
agccagctggagaagcggggcattcaggccgagtgtattcacagcggtcgtactcaggcg
gtgcgtgaacagatcctggcggactttaaggcgggtaagattgcctaccttatctccacc
ggcatctcggcgcgcgggatagatatcgataacctgccgctggtgatcaactatgacctg
ccgtttcccgctgacgaatatgtgcatcgcatcgggcgtaccggccgagccggcgccaag
ggcgaggcgatctccctggtgtctaaagatgactttaagaacctctgcatgatcgagagc
cgcctcgatcacttgctggaacgtcgagagatagaaggtttcgcgccgagaaaacctgta
cccatctctatccttaactatgtgcccaaggccaagcgtgagcaggcgcagggtgagaag
ggtagcgaagccgcggctagccaaggtgtgaaggctcctaaggaagctaaggataagcgc
agagaagataagcctagagggcaatccaagtctcaaggtaaggcaactccttataaaggt
agctctacagacaagaaggctcggcctgctaaagctaaatcagcagcgcctagtgatcgc
ggtgggaaagatcaaaggttagagcataaggttgaagaaaagccagcttttaatccttgg
gccgaaagtcggccgggtaagaaataa
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